hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-06152288/chunk_1/iprscan-20080807-06152288.nocrc
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Query sequence: bj00350
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00020.9.ls TNFR/NGFR cysteine-rich region                  45.2    2.1e-10   4
PF00020.9.fs TNFR/NGFR cysteine-rich region                  37.6    2.6e-10   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00020.9.fs   1/4      56    90 ..     1    42 []    27.4  2.8e-07
PF00020.9.ls   1/4      56    90 ..     1    42 []    29.2  1.3e-05

Alignments of top-scoring domains:
PF00020.9.fs: domain 1 of 4, from 56 to 90: score 27.4, E = 2.8e-07
                   *->CeegvtYtdenhvpqClsCskCepemGqvlvspCtatqnTvC<-*
                      C   ++Y +    ++C  C kCep  G +++s Ct t++ vC   
     bj00350    56    CTSEKHYEH-L--GRC--CNKCEP--GKYMSSKCTTTSDSVC    90   

PF00020.9.ls: domain 1 of 4, from 56 to 90: score 29.2, E = 1.3e-05
                   *->CeegvtYtdenhvpqClsCskCepemGqvlvspCtatqnTvC<-*
                      C   ++Y +    ++C  C kCep  G +++s Ct t++ vC   
     bj00350    56    CTSEKHYEH-L--GRC--CNKCEP--GKYMSSKCTTTSDSVC    90   

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