hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-06152288/chunk_1/iprscan-20080807-06152288.nocrc
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Query sequence: bj00350
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00208                                                 138.0      1e-36   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00208    1/4      56    90 ..     1    50 []    39.4  4.8e-07
SM00208    2/4      93   134 ..     1    50 []    26.9   0.0029
SM00208    3/4     136   173 ..     1    50 []    28.2   0.0011
SM00208    4/4     176   216 ..     1    50 []    43.5  2.8e-08

Alignments of top-scoring domains:
SM00208: domain 1 of 4, from 56 to 90: score 39.4, E = 4.8e-07
                   *->CkegegtYtddgnhssrlpkClpCthtrCppehmGqvvkspCtatsd
                      C++ e++Y +        ++C  C   +C+p   G++++s Ct tsd
     bj00350    56    CTS-EKHYEHL-------GRC--CN--KCEP---GKYMSSKCTTTSD 87   

                   TvC<-*
                    vC   
     bj00350    88 SVC    90   

SM00208: domain 2 of 4, from 93 to 134: score 26.9, E = 0.0029
                   *->CkegegtYtddgnhssrlpkClpCthtrCppehmGqvvkspCtatsd
                      C   +++Y d++n++   +kCl +    C+     +v++  +++t +
     bj00350    93    CG--PDEYLDSWNEE---DKCLLHK--VCDTGK-ALVAVVAGNSTTP 131  

                   TvC<-*
                   ++C   
     bj00350   132 RRC    134  

SM00208: domain 3 of 4, from 136 to 173: score 28.2, E = 0.0011
                   *->CkegegtYtddgnhssrlpkClpCt.htrCppehmGqvvkspCtats
                      C+  +g ++++         C++C+++t C p   G+++ +p + ++
     bj00350   136    CT--AGYHWSQ--------DCECCRrNTECAP---GLGAQHPLQLNK 169  

                   dTvC<-*
                   dTvC   
     bj00350   170 DTVC    173  

SM00208: domain 4 of 4, from 176 to 216: score 43.5, E = 2.8e-08
                   *->CkegegtYtddgnhssrlpkClpCthtrCppehmGqvvkspCtatsd
                      C   +g ++d  + +   +kC+p+t  +C+   +G++v +++t++sd
     bj00350   176    CL--AGYFSDAFSST---DKCRPWT--NCTF--LGKRVEHHGTEKSD 213  

                   TvC<-*
                   +vC   
     bj00350   214 AVC    216  

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