hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-06262665/chunk_1/iprscan-20080807-06262665.nocrc
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Query sequence: bj00372
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF00348.8.fs    Polyprenyl synthetase                   113.0    1.8e-31   1
PF00348.8.ls    Polyprenyl synthetase                    -7.5    6.9e-09   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF00348.8.fs      1/1     127   290 ..     1   184 [.   113.0  1.8e-31
PF00348.8.ls      1/1     127   297 .]     1   285 []    -7.5  6.9e-09

Alignments of top-scoring domains:
PF00348.8.fs: domain 1 of 1, from 127 to 290: score 113.0, E = 1.8e-31
                   *->llaamlyyllagGGKRiRPllvvlaaralGkevekldyevetetlla
                       l++m++y + g GK  RP +v l ara+ +           ++ +a
     bj00372   127    ELKEMSEYYFDGKGKAFRPIIVALMARAC-NIHHNNS-RHVQASQRA 171  

                   lAaaiEmiHtaSLvHDDlPaMDnsdlRRGkPTcHkkFGeavAILaGDaLl
                   +A + EmiHtaSLvHDD+  +D++  RRGk T++k++Ge+ A+LaGD +l
     bj00372   172 IALIAEMIHTASLVHDDV--IDDASSRRGKHTVNKIWGEKKAVLAGDLIL 219  

                   srAfqlladldsphvrperkliaiseLanavgaqGevgGQllDlesegkg
                   s A + la+++        ++i i  +++++ ++Ge + Ql  +e+e + 
     bj00372   220 SAASIALARIG------NTTVISILTQVIEDLVRGEFL-QLGSKENENE- 261  

                   evDLiditleeylrihryKTAaLSFeasvqlgaivAG<-*
                             +yl++ + KTA L ++ s+++  ++++   
     bj00372   262 -------RFAHYLEKTFKKTASL-IANSCKAVCLCSR    290  

PF00348.8.ls: domain 1 of 1, from 127 to 297: score -7.5, E = 6.9e-09
                   *->llaamlyyllagGGKRiRPllvvlaaralGkevekldyevetetlla
                       l++m++y + g GK  RP +v l ara+ +           ++ +a
     bj00372   127    ELKEMSEYYFDGKGKAFRPIIVALMARAC-NIHHNNS-RHVQASQRA 171  

                   lAaaiEmiHtaSLvHDDlPaMDnsdlRRGkPTcHkkFGeavAILaGDaLl
                   +A + EmiHtaSLvHDD+  +D++  RRGk T++k++Ge+ A+LaGD +l
     bj00372   172 IALIAEMIHTASLVHDDV--IDDASSRRGKHTVNKIWGEKKAVLAGDLIL 219  

                   srAfqlladldsphvrperkliaiseLanavgaqGevgGQllDlesegkg
                   s A + la+++        ++i i  +++++ ++Ge + Ql  +e+e + 
     bj00372   220 SAASIALARIG------NTTVISILTQVIEDLVRGEFL-QLGSKENENE- 261  

                   evDLiditleeylrihryKTAaLSFeasvqlgaivAGadDeeeekaLkdf
                             +yl++ + KTA L ++ s+++  ++++ +    +      
     bj00372   262 -------RFAHYLEKTFKKTASL-IANSCKAVCLCSRMS----RP----- 294  

                   grdlGlaFQIvDDiLDltgdteelGKpvGsDlqeGKsTlpvllaLegnPa
                                                                 g   
     bj00372   295 ---------------------------------------------SG--- 296  

                   reeqrkllreaieqklseaalqgvaltkalealaeyie<-*
                                                            
     bj00372   297 -------------------------------------A    297  

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