# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm00412.fasta.nr -Q bm00412.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm00412, 397 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6815977 sequences Expectation_n fit: rho(ln(x))= 5.9281+/-0.000209; mu= 8.9385+/- 0.012 mean_var=134.2103+/-25.960, 0's: 37 Z-trim: 49 B-trim: 602 in 2/63 Lambda= 0.110709 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62089116|dbj|BAD93002.1| methyl-CpG binding dom ( 397) 2879 470.8 2e-130 gi|67968403|dbj|BAE00563.1| unnamed protein produc ( 566) 1693 281.6 2.6e-73 gi|5777950|gb|AAD51445.1|AF078833_1 methyl-CpG bin ( 503) 1381 231.7 2.4e-58 gi|5777946|gb|AAD51443.1|AF078831_1 methyl-CpG bin ( 586) 1227 207.2 6.8e-51 gi|119583370|gb|EAW62966.1| methyl-CpG binding dom ( 586) 1219 205.9 1.7e-50 gi|144704702|gb|ABP02056.1| methyl-CpG binding dom ( 536) 1215 205.2 2.4e-50 gi|21620082|gb|AAH33242.1| Methyl-CpG binding doma ( 549) 1185 200.4 6.9e-49 gi|5777948|gb|AAD51444.1|AF078832_1 methyl-CpG bin ( 549) 1181 199.8 1.1e-48 gi|2239126|emb|CAA71735.1| methyl-CpG binding prot ( 556) 1050 178.9 2.1e-42 gi|119583368|gb|EAW62964.1| methyl-CpG binding dom ( 556) 1050 178.9 2.1e-42 gi|114673218|ref|XP_512130.2| PREDICTED: methyl-Cp ( 884) 1008 172.4 3e-40 gi|149720933|ref|XP_001499382.1| PREDICTED: methyl ( 553) 909 156.4 1.3e-35 gi|31414478|emb|CAD92308.1| methyl-CpG binding dom ( 550) 903 155.4 2.5e-35 gi|124054431|gb|ABM89443.1| MBD1 [Pongo pygmaeus] ( 592) 842 145.7 2.2e-32 gi|50401200|sp|Q9UIS9.2|MBD1_HUMAN Methyl-CpG-bind ( 605) 836 144.7 4.4e-32 gi|5739181|gb|AAD50371.1| methyl-CpG binding prote ( 605) 836 144.7 4.4e-32 gi|5777944|gb|AAD51442.1|AF078830_1 methyl-CpG bin ( 605) 836 144.7 4.4e-32 gi|158256470|dbj|BAF84208.1| unnamed protein produ ( 605) 836 144.7 4.4e-32 gi|55727757|emb|CAH90629.1| hypothetical protein [ ( 605) 831 143.9 7.7e-32 gi|124111383|gb|ABM92100.1| MBD1 [Pan troglodytes] ( 592) 827 143.3 1.2e-31 gi|109122191|ref|XP_001098362.1| PREDICTED: simila ( 791) 823 142.8 2.2e-31 gi|86437962|gb|AAI12459.1| Methyl-CpG binding doma ( 642) 739 129.3 2.1e-27 gi|149720935|ref|XP_001499360.1| PREDICTED: methyl ( 546) 735 128.6 3e-27 gi|149720939|ref|XP_001499397.1| PREDICTED: simila ( 500) 733 128.2 3.5e-27 gi|149720937|ref|XP_001499413.1| PREDICTED: methyl ( 583) 730 127.8 5.4e-27 gi|149720931|ref|XP_001499371.1| PREDICTED: methyl ( 602) 730 127.8 5.5e-27 gi|73962230|ref|XP_537343.2| PREDICTED: similar to ( 770) 710 124.7 5.9e-26 gi|51859293|gb|AAH81932.1| Methyl-CpG binding doma ( 533) 707 124.1 6.5e-26 gi|67971852|dbj|BAE02268.1| unnamed protein produc ( 432) 700 122.9 1.2e-25 gi|120975082|gb|ABM46833.1| MBD1 [Gorilla gorilla] ( 397) 697 122.3 1.6e-25 gi|124013743|gb|ABM88149.1| MBD1 [Macaca nemestrin ( 356) 692 121.5 2.6e-25 gi|122935073|gb|ABM68304.1| MBD1 [Lagothrix lagotr ( 202) 664 116.7 4e-24 gi|121223689|gb|ABM47767.1| MBD1 [Saguinus labiatu ( 266) 659 116.1 8.3e-24 gi|122935071|gb|ABM68302.1| MBD1 [Lagothrix lagotr ( 147) 532 95.5 7.2e-18 gi|121484158|gb|ABM54425.1| MBD1 [Pan paniscus] ( 195) 470 85.7 8.3e-15 gi|124013742|gb|ABM88148.1| MBD1 [Macaca nemestrin ( 142) 455 83.2 3.5e-14 gi|149027169|gb|EDL82893.1| rCG41735, isoform CRA_ ( 322) 458 84.1 4.3e-14 gi|149027168|gb|EDL82892.1| rCG41735, isoform CRA_ ( 330) 437 80.7 4.5e-13 gi|26328347|dbj|BAC27914.1| unnamed protein produc ( 467) 439 81.2 4.5e-13 gi|148677583|gb|EDL09530.1| methyl-CpG binding dom ( 572) 439 81.3 5.2e-13 gi|12835923|dbj|BAB23419.1| unnamed protein produc ( 588) 439 81.3 5.3e-13 gi|148677586|gb|EDL09533.1| methyl-CpG binding dom ( 520) 436 80.8 6.8e-13 gi|148677584|gb|EDL09531.1| methyl-CpG binding dom ( 556) 436 80.8 7.1e-13 gi|148677585|gb|EDL09532.1| methyl-CpG binding dom ( 569) 436 80.8 7.2e-13 gi|74224160|dbj|BAE33700.1| unnamed protein produc ( 580) 436 80.8 7.3e-13 gi|74184170|dbj|BAE37086.1| unnamed protein produc ( 298) 431 79.7 8.2e-13 gi|47122682|gb|AAH69837.1| Mbd1 protein [Mus muscu ( 588) 434 80.5 9.2e-13 gi|148677587|gb|EDL09534.1| methyl-CpG binding dom ( 628) 431 80.1 1.3e-12 gi|158523333|sp|Q9Z2E2.2|MBD1_MOUSE Methyl-CpG-bin ( 636) 428 79.6 1.9e-12 gi|5731990|gb|AAD48908.1|AF120978_1 methyl-CpG bin ( 636) 428 79.6 1.9e-12 >>gi|62089116|dbj|BAD93002.1| methyl-CpG binding domain (397 aa) initn: 2879 init1: 2879 opt: 2879 Z-score: 2496.8 bits: 470.8 E(): 2e-130 Smith-Waterman score: 2879; 100.000% identity (100.000% similar) in 397 aa overlap (1-397:1-397) 10 20 30 40 50 60 bm0041 HPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADTDTAPASFPAPGCCENC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 HPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADTDTAPASFPAPGCCENC 10 20 30 40 50 60 70 80 90 100 110 120 bm0041 GISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKSRGCGVCRGCQTQEDCGHCPICLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKSRGCGVCRGCQTQEDCGHCPICLR 70 80 90 100 110 120 130 140 150 160 170 180 bm0041 PPRPGLRRQWKCVQRRCLRHLAHRLRRRHQRCQRRTPLAVAPPTGKHARRKGGCDSKMAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PPRPGLRRQWKCVQRRCLRHLAHRLRRRHQRCQRRTPLAVAPPTGKHARRKGGCDSKMAA 130 140 150 160 170 180 190 200 210 220 230 240 bm0041 RRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELKRLLPSVWSESEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELKRLLPSVWSESEDG 190 200 210 220 230 240 250 260 270 280 290 300 bm0041 AGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDL 250 260 270 280 290 300 310 320 330 340 350 360 bm0041 VFLREGASSPVQVPGPVAASTEALLQAVDPGLPSVKQEPPDPEEDKEENKDDSASKIGPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VFLREGASSPVQVPGPVAASTEALLQAVDPGLPSVKQEPPDPEEDKEENKDDSASKIGPR 310 320 330 340 350 360 370 380 390 bm0041 GRGRRGWHTRDHGDFQPGWNPLPRYSSLVAKVLPPCS ::::::::::::::::::::::::::::::::::::: gi|620 GRGRRGWHTRDHGDFQPGWNPLPRYSSLVAKVLPPCS 370 380 390 >>gi|67968403|dbj|BAE00563.1| unnamed protein product [M (566 aa) initn: 1864 init1: 1660 opt: 1693 Z-score: 1471.2 bits: 281.6 E(): 2.6e-73 Smith-Waterman score: 2329; 77.753% identity (78.855% similar) in 454 aa overlap (1-359:77-530) 10 20 30 bm0041 HPVAVASKKRKKPSRPAKTRKRQVGPQSGE ::::::::::::::.::::::::::::::: gi|679 VELTRYLGPACDLTLFDFKQGILCYPAPKAHPVAVASKKRKKPSKPAKTRKRQVGPQSGE 50 60 70 80 90 100 40 50 60 70 80 90 bm0041 VRKEAPRDETKADTDTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|679 VRKEAPRDETKADTDTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNR 110 120 130 140 150 160 100 bm0041 EQRMFK-------------------------------------------------SRGCG :::::: ::::: gi|679 EQRMFKRVGCGECAACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCG 170 180 190 200 210 220 110 120 130 140 150 160 bm0041 VCRGCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLRHLAHRLRRRHQRCQRRTPLAVA ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|679 VCRGCQTQEDCGRCPICLRPPRPGLRRQWKCVQRRCLRHLAHRLRRRHQRCQRRTPLAVA 230 240 250 260 270 280 170 180 190 200 210 220 bm0041 PPTGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCV ::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::: gi|679 PPTGKHARRKGGCDSKMAARRRPGAQPLPPPSPSQSPEPTEPHPRALAPSPPAEFIYYCV 290 300 310 320 330 340 230 240 250 260 270 280 bm0041 DEDELKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQA ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|679 DEDELKRLLPSVWSESEDGAGSPPPYHRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQA 350 360 370 380 390 400 290 300 310 320 bm0041 PTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEALLQ--------------- ::::::::::::::::::::::::::::::::::::::::::::: gi|679 PTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEALLQEAQCSGLSWVVALPQ 410 420 430 440 450 460 330 340 350 bm0041 -------------------------------AVDPGLPSVKQEPPDPEEDKEENKDDSAS ::::::::::::::::::::::::::::: gi|679 VKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQEPPDPEEDKEENKDDSAS 470 480 490 500 510 520 360 370 380 390 bm0041 KIGPRGRGRRGWHTRDHGDFQPGWNPLPRYSSLVAKVLPPCS :..: gi|679 KLAPEEEITEIFSLGGTRFRDTAVWLPRSKDLKKPGARKQ 530 540 550 560 >>gi|5777950|gb|AAD51445.1|AF078833_1 methyl-CpG binding (503 aa) initn: 2220 init1: 1362 opt: 1381 Z-score: 1202.5 bits: 231.7 E(): 2.4e-58 Smith-Waterman score: 2222; 81.373% identity (81.863% similar) in 408 aa overlap (1-359:77-459) 10 20 30 bm0041 HPVAVASKKRKKPSRPAKTRKRQVGPQSGE :::::::::::::::::::::::::::::: gi|577 VELTRYLGPACDLTLFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGE 50 60 70 80 90 100 40 50 60 70 80 90 bm0041 VRKEAPRDETKADTDTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|577 VRKEAPRDETKADTDTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNR 110 120 130 140 150 160 100 bm0041 EQRMFK-------------------------------------------------SRGCG :::::: ::::: gi|577 EQRMFKRVGCGECAACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCG 170 180 190 200 210 220 110 120 130 140 150 160 bm0041 VCRGCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLRHLAHRLRRRHQRCQRRTPLAVA :::::::::::::::::::::::::::::::::::::: gi|577 VCRGCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLR---------------------- 230 240 250 260 170 180 190 200 210 220 bm0041 PPTGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|577 ---GKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCV 270 280 290 300 310 320 230 240 250 260 270 280 bm0041 DEDELKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|577 DEDELKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQA 330 340 350 360 370 380 290 300 310 320 330 340 bm0041 PTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEALLQAVDPGLPSVKQEPPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|577 PTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEALLQAVDPGLPSVKQEPPD 390 400 410 420 430 440 350 360 370 380 390 bm0041 PEEDKEENKDDSASKIGPRGRGRRGWHTRDHGDFQPGWNPLPRYSSLVAKVLPPCS :::::::::::::::..: gi|577 PEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKPGAR 450 460 470 480 490 500 >>gi|5777946|gb|AAD51443.1|AF078831_1 methyl-CpG binding (586 aa) initn: 2066 init1: 900 opt: 1227 Z-score: 1068.8 bits: 207.2 E(): 6.8e-51 Smith-Waterman score: 1987; 70.975% identity (73.243% similar) in 441 aa overlap (1-359:77-492) 10 20 30 bm0041 HPVAVASKKRKKPSRPAKTRKRQVGPQSGE :::::::::::::::::::::::::::::: gi|577 VELTRYLGPACDLTLFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGE 50 60 70 80 90 100 40 50 60 70 80 90 bm0041 VRKEAPRDETKADTDTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|577 VRKEAPRDETKADTDTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNR 110 120 130 140 150 160 100 bm0041 EQRMFK-------------------------------------------------SRGCG :::::: ::::: gi|577 EQRMFKRVGCGECAACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCG 170 180 190 200 210 220 110 120 130 140 150 160 bm0041 VCRGCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLRHLAHRLRRRHQRCQRRTPLAVA :::::::::::::::::::::::::::::::::::::: gi|577 VCRGCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLR---------------------- 230 240 250 260 170 180 190 200 210 bm0041 PPTGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHP-----RALAPSPPAEF :::::::::::::::::::::::::::::::::::::::.: . . : gi|577 ---GKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPQPYTNRRQNRKCGACAAC 270 280 290 300 310 320 220 230 240 bm0041 IY--------YCVDEDE--------------------LKRLLPSVWSESEDGAGSPPPYR . .: :. . .:::::::::::::::::::::: gi|577 LRRNGCGRCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYR 330 340 350 360 370 380 250 260 270 280 290 300 bm0041 RRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|577 RRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGAS 390 400 410 420 430 440 310 320 330 340 350 360 bm0041 SPVQVPGPVAASTEALLQAVDPGLPSVKQEPPDPEEDKEENKDDSASKIGPRGRGRRGWH ::::::::::::::::::::::::::::::::::::::::::::::::..: gi|577 SPVQVPGPVAASTEALLQAVDPGLPSVKQEPPDPEEDKEENKDDSASKLAPEEEAGGAGT 450 460 470 480 490 500 370 380 390 bm0041 TRDHGDFQPGWNPLPRYSSLVAKVLPPCS gi|577 PVITEIFSLGGTRFRDTAVWLPSLQGRHSGREDGCKVWETEDTVEPTSTSWNPRGWPGTH 510 520 530 540 550 560 >>gi|119583370|gb|EAW62966.1| methyl-CpG binding domain (586 aa) initn: 2066 init1: 900 opt: 1219 Z-score: 1061.9 bits: 205.9 E(): 1.7e-50 Smith-Waterman score: 1987; 70.975% identity (73.243% similar) in 441 aa overlap (1-359:77-492) 10 20 30 bm0041 HPVAVASKKRKKPSRPAKTRKRQVGPQSGE :::::::::::::::::::::::::::::: gi|119 VELTRYLGPACDLTLFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGE 50 60 70 80 90 100 40 50 60 70 80 90 bm0041 VRKEAPRDETKADTDTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VRKEAPRDETKADTDTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNR 110 120 130 140 150 160 100 bm0041 EQRMFK-------------------------------------------------SRGCG :::::: ::::: gi|119 EQRMFKRVGCGECAACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCG 170 180 190 200 210 220 110 120 130 140 150 160 bm0041 VCRGCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLRHLAHRLRRRHQRCQRRTPLAVA :::::::::::::::::::::::::::::::::::::: gi|119 VCRGCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLR---------------------- 230 240 250 260 170 180 190 200 210 bm0041 PPTGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHP-----RALAPSPPAEF :::::::::::::::::::::::::::::::::::::::.: . . : gi|119 ---GKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPQPYTNRRQNRKCGACAAC 270 280 290 300 310 320 220 230 240 bm0041 IY--------YCVDEDE--------------------LKRLLPSVWSESEDGAGSPPPYR . .: :. . .:::::::::::::::::::::: gi|119 LRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYR 330 340 350 360 370 380 250 260 270 280 290 300 bm0041 RRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGAS 390 400 410 420 430 440 310 320 330 340 350 360 bm0041 SPVQVPGPVAASTEALLQAVDPGLPSVKQEPPDPEEDKEENKDDSASKIGPRGRGRRGWH ::::::::::::::::::::::::::::::::::::::::::::::::..: gi|119 SPVQVPGPVAASTEALLQAVDPGLPSVKQEPPDPEEDKEENKDDSASKLAPEEEAGGAGT 450 460 470 480 490 500 370 380 390 bm0041 TRDHGDFQPGWNPLPRYSSLVAKVLPPCS gi|119 PVITEIFSLGGTRFRDTAVWLPSLQGRHSGREDGCKVWETEDTVEPTSTSWNPRGWPGTH 510 520 530 540 550 560 >>gi|144704702|gb|ABP02056.1| methyl-CpG binding domain (536 aa) initn: 2066 init1: 900 opt: 1215 Z-score: 1058.9 bits: 205.2 E(): 2.4e-50 Smith-Waterman score: 1977; 70.748% identity (73.243% similar) in 441 aa overlap (1-359:77-492) 10 20 30 bm0041 HPVAVASKKRKKPSRPAKTRKRQVGPQSGE :::::::::::::::::::::::::::::: gi|144 VELTRYLGPACDLTLFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGE 50 60 70 80 90 100 40 50 60 70 80 90 bm0041 VRKEAPRDETKADTDTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|144 VRKEAPRDETKADTDTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNR 110 120 130 140 150 160 100 bm0041 EQRMFK-------------------------------------------------SRGCG :::::: ::::: gi|144 EQRMFKRVGCGECAACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCG 170 180 190 200 210 220 110 120 130 140 150 160 bm0041 VCRGCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLRHLAHRLRRRHQRCQRRTPLAVA ::::::::::::.::::::::::::::::::::::::: gi|144 VCRGCQTQEDCGRCPICLRPPRPGLRRQWKCVQRRCLR---------------------- 230 240 250 260 170 180 190 200 210 bm0041 PPTGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHP-----RALAPSPPAEF :::::::::::::::::::::::::::::::::::::::.: . . : gi|144 ---GKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPQPYMNRRQNRKCGACAAC 270 280 290 300 310 320 220 230 240 bm0041 IY--------YCVDEDE--------------------LKRLLPSVWSESEDGAGSPPPYR . .: :. . .:::::::::::::::::::::: gi|144 LRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYR 330 340 350 360 370 380 250 260 270 280 290 300 bm0041 RRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|144 RRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGAS 390 400 410 420 430 440 310 320 330 340 350 360 bm0041 SPVQVPGPVAASTEALLQAVDPGLPSVKQEPPDPEEDKEENKDDSASKIGPRGRGRRGWH ::::::::::::::::::::::::::::::::::::::::::::::::..: gi|144 SPVQVPGPVAASTEALLQAVDPGLPSVKQEPPDPEEDKEENKDDSASKLAPEEEAGGAGT 450 460 470 480 490 500 370 380 390 bm0041 TRDHGDFQPGWNPLPRYSSLVAKVLPPCS gi|144 PVITEIFSLGGTRFRDTAVWLPRSKDLKKPGARKQ 510 520 530 >>gi|21620082|gb|AAH33242.1| Methyl-CpG binding domain p (549 aa) initn: 2158 init1: 1144 opt: 1185 Z-score: 1032.9 bits: 200.4 E(): 6.9e-49 Smith-Waterman score: 2120; 73.128% identity (73.568% similar) in 454 aa overlap (1-359:77-505) 10 20 30 bm0041 HPVAVASKKRKKPSRPAKTRKRQVGPQSGE :::::::::::::::::::::::::::::: gi|216 VELTRYLGPACDLTLFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGE 50 60 70 80 90 100 40 50 60 70 80 90 bm0041 VRKEAPRDETKADTDTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 VRKEAPRDETKADTDTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNR 110 120 130 140 150 160 100 bm0041 EQRMFK-------------------------------------------------SRGCG :::::: ::::: gi|216 EQRMFKRVGCGECAACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCG 170 180 190 200 210 220 110 120 130 140 150 160 bm0041 VCRGCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLRHLAHRLRRRHQRCQRRTPLAVA :::::::::::::::::::::::::::::::::::::: gi|216 VCRGCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLR---------------------- 230 240 250 260 170 180 190 200 210 220 bm0041 PPTGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 ---GKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCV 270 280 290 300 310 320 230 240 250 260 270 280 bm0041 DEDELKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 DEDELKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQA 330 340 350 360 370 380 290 300 310 320 bm0041 PTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEALLQ--------------- ::::::::::::::::::::::::::::::::::::::::::::: gi|216 PTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEALLQEAQCSGLSWVVALPQ 390 400 410 420 430 440 330 340 350 bm0041 -------------------------------AVDPGLPSVKQEPPDPEEDKEENKDDSAS ::::::::::::::::::::::::::::: gi|216 VKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQEPPDPEEDKEENKDDSAS 450 460 470 480 490 500 360 370 380 390 bm0041 KIGPRGRGRRGWHTRDHGDFQPGWNPLPRYSSLVAKVLPPCS :..: gi|216 KLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKPGARKQ 510 520 530 540 >>gi|5777948|gb|AAD51444.1|AF078832_1 methyl-CpG binding (549 aa) initn: 2154 init1: 1140 opt: 1181 Z-score: 1029.4 bits: 199.8 E(): 1.1e-48 Smith-Waterman score: 2116; 72.907% identity (73.568% similar) in 454 aa overlap (1-359:77-505) 10 20 30 bm0041 HPVAVASKKRKKPSRPAKTRKRQVGPQSGE :::::::::::::::::::::::::::::: gi|577 VELTRYLGPACDLTLFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGE 50 60 70 80 90 100 40 50 60 70 80 90 bm0041 VRKEAPRDETKADTDTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|577 VRKEAPRDETKADTDTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNR 110 120 130 140 150 160 100 bm0041 EQRMFK-------------------------------------------------SRGCG :::::: ::::: gi|577 EQRMFKRVGCGECAACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCG 170 180 190 200 210 220 110 120 130 140 150 160 bm0041 VCRGCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLRHLAHRLRRRHQRCQRRTPLAVA :::::::::::::::::::::::::::::::::::::: gi|577 VCRGCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLR---------------------- 230 240 250 260 170 180 190 200 210 220 bm0041 PPTGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|577 ---GKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCV 270 280 290 300 310 320 230 240 250 260 270 280 bm0041 DEDELKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQA :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|577 DEDELQRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQA 330 340 350 360 370 380 290 300 310 320 bm0041 PTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEALLQ--------------- ::::::::::::::::::::::::::::::::::::::::::::: gi|577 PTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEALLQEAQCSGLSWVVALPQ 390 400 410 420 430 440 330 340 350 bm0041 -------------------------------AVDPGLPSVKQEPPDPEEDKEENKDDSAS ::::::::::::::::::::::::::::: gi|577 VKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQEPPDPEEDKEENKDDSAS 450 460 470 480 490 500 360 370 380 390 bm0041 KIGPRGRGRRGWHTRDHGDFQPGWNPLPRYSSLVAKVLPPCS :..: gi|577 KLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKPGARKQ 510 520 530 540 >>gi|2239126|emb|CAA71735.1| methyl-CpG binding protein (556 aa) initn: 1923 init1: 1028 opt: 1050 Z-score: 916.3 bits: 178.9 E(): 2.1e-42 Smith-Waterman score: 2100; 71.800% identity (72.234% similar) in 461 aa overlap (1-359:77-512) 10 20 30 bm0041 HPVAVASKKRKKPSRPAKTRKRQVGPQSGE :::::::::::::::::::::::::::::: gi|223 VELTRYLGPACDLTLFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGE 50 60 70 80 90 100 40 50 60 70 80 90 bm0041 VRKEAPRDETKADTDTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|223 VRKEAPRDETKADTDTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNR 110 120 130 140 150 160 100 110 120 130 140 150 bm0041 EQRMFKSRGCGVCRGCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLRHLAHRLRRRHQ ::::::::::::::::::::::::::::::::::::::::::::::::: gi|223 EQRMFKSRGCGVCRGCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLR----------- 170 180 190 200 210 160 170 180 190 200 210 bm0041 RCQRRTPLAVAPPTGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAP :::::::::::::::::::::::::::::::::::::::::::::: gi|223 --------------GKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAP 220 230 240 250 260 220 bm0041 SPPAEFIYYCVDEDEL-------------------------------------------- :::::::::::::::: gi|223 SPPAEFIYYCVDEDELQPYTNRRQNRKCGACAACLRRNGCGRCDFCCDKPKFGGSNQKRQ 270 280 290 300 310 320 230 240 250 260 270 bm0041 ------------KRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTA :::::::::::::::::::::::::::::::::::::::::::::::: gi|223 KCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTA 330 340 350 360 370 380 280 290 300 310 320 bm0041 QPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEALLQ-------- :::::::::::::::::::::::::::::::::: ::::::::::::::::: gi|223 QPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASXPVQVPGPVAASTEALLQEAQCSGMS 390 400 410 420 430 440 330 340 bm0041 --------------------------------------AVDPGLPSVKQEPPDPEEDKEE :::::::::::::::::::::: gi|223 WVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQEPPDPEEDKEE 450 460 470 480 490 500 350 360 370 380 390 bm0041 NKDDSASKIGPRGRGRRGWHTRDHGDFQPGWNPLPRYSSLVAKVLPPCS ::::::::..: gi|223 NKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKPGARKQ 510 520 530 540 550 >>gi|119583368|gb|EAW62964.1| methyl-CpG binding domain (556 aa) initn: 1929 init1: 1028 opt: 1050 Z-score: 916.3 bits: 178.9 E(): 2.1e-42 Smith-Waterman score: 2106; 72.017% identity (72.451% similar) in 461 aa overlap (1-359:77-512) 10 20 30 bm0041 HPVAVASKKRKKPSRPAKTRKRQVGPQSGE :::::::::::::::::::::::::::::: gi|119 VELTRYLGPACDLTLFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGE 50 60 70 80 90 100 40 50 60 70 80 90 bm0041 VRKEAPRDETKADTDTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VRKEAPRDETKADTDTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNR 110 120 130 140 150 160 100 110 120 130 140 150 bm0041 EQRMFKSRGCGVCRGCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLRHLAHRLRRRHQ ::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EQRMFKSRGCGVCRGCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLR----------- 170 180 190 200 210 160 170 180 190 200 210 bm0041 RCQRRTPLAVAPPTGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAP :::::::::::::::::::::::::::::::::::::::::::::: gi|119 --------------GKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAP 220 230 240 250 260 220 bm0041 SPPAEFIYYCVDEDEL-------------------------------------------- :::::::::::::::: gi|119 SPPAEFIYYCVDEDELQPYTNRRQNRKCGACAACLRRMDCGRCDFCCDKPKFGGSNQKRQ 270 280 290 300 310 320 230 240 250 260 270 bm0041 ------------KRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTA :::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTA 330 340 350 360 370 380 280 290 300 310 320 bm0041 QPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEALLQ-------- :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEALLQEAQCSGLS 390 400 410 420 430 440 330 340 bm0041 --------------------------------------AVDPGLPSVKQEPPDPEEDKEE :::::::::::::::::::::: gi|119 WVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQEPPDPEEDKEE 450 460 470 480 490 500 350 360 370 380 390 bm0041 NKDDSASKIGPRGRGRRGWHTRDHGDFQPGWNPLPRYSSLVAKVLPPCS ::::::::..: gi|119 NKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKPGARKQ 510 520 530 540 550 397 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 06:29:20 2008 done: Thu Aug 7 06:31:47 2008 Total Scan time: 809.290 Total Display time: 0.120 Function used was FASTA [version 34.26.5 April 26, 2007]