hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-06314880/chunk_1/iprscan-20080807-06314880.nocrc
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Query sequence: bm00412
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02008.10.fs CXXC zinc finger                                77.7    5.6e-31   1
PF02008.10.ls CXXC zinc finger                                79.6    8.9e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02008.10.fs   1/1      92   137 ..     1    49 []    77.7  5.6e-31
PF02008.10.ls   1/1      92   137 ..     1    49 []    79.6  8.9e-21

Alignments of top-scoring domains:
PF02008.10.fs: domain 1 of 1, from 92 to 137: score 77.7, E = 5.6e-31
                   *->qnsrkrrrCGvCegCqrpeDCGqCtaCldkpkFGGpgrkkQWkCiqR
                      q+++k+r+CGvC+gCq++eDCG+C++Cl++p+   pg ++QWkC+qR
     bm00412    92    QRMFKSRGCGVCRGCQTQEDCGHCPICLRPPR---PGLRRQWKCVQR 135  

                   RC<-*
                   RC   
     bm00412   136 RC    137  

PF02008.10.ls: domain 1 of 1, from 92 to 137: score 79.6, E = 8.9e-21
                   *->qnsrkrrrCGvCegCqrpeDCGqCtaCldkpkFGGpgrkkQWkCiqR
                      q+++k+r+CGvC+gCq++eDCG+C++Cl++p+   pg ++QWkC+qR
     bm00412    92    QRMFKSRGCGVCRGCQTQEDCGHCPICLRPPR---PGLRRQWKCVQR 135  

                   RC<-*
                   RC   
     bm00412   136 RC    137  

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