hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-06363705/chunk_1/iprscan-20080807-06363705.nocrc
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Query sequence: bm00447
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00621.11.fs RhoGEF domain                                  120.7    1.8e-35   1
PF00621.11.ls RhoGEF domain                                  122.4    1.2e-33   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00621.11.fs   1/1     215   386 ..     1   207 []   120.7  1.8e-35
PF00621.11.ls   1/1     215   386 ..     1   207 []   122.4  1.2e-33

Alignments of top-scoring domains:
PF00621.11.fs: domain 1 of 1, from 215 to 386: score 120.7, E = 1.8e-35
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
                      vl+El+eTEk Yv+dL  ++ +ym+++ + + ++  +L+ +d  ++F
     bm00447   215    VLSELVETEKMYVDDLGQIVEGYMATMAA-QGVP-ESLRGRD-RIVF 258  

                   sNiediyefhre.FLkssLearisssnfedlDekkiepsaqrlGdlFlel
                   +Ni  iye hr+ FL+ +L  ++ +              +  l++lF+++
     bm00447   259 GNIQQIYEWHRDyFLQ-ELQRCLKD--------------PDWLAQLFIKH 293  

                   kaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAk
                    ++ l +Y  Yc+nkp ++ +++         +F e+ ++++ +      
     bm00447   294 -ERRLHMYVVYCQNKPKSEHVVSE----FGDSYFEELRQQLGHR------ 332  

                   ddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkald
                        l L +LL+kPvqRi +Y+LLLk+ Lk+       ++++dL++a +
     bm00447   333 -----LQLNDLLIKPVQRIMKYQLLLKDFLKYYNR--AGMDTADLEQAVE 375  

                   alqdlaksiNe<-*
                    +  ++k+ N+   
     bm00447   376 VMCFVPKRCND    386  

PF00621.11.ls: domain 1 of 1, from 215 to 386: score 122.4, E = 1.2e-33
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
                      vl+El+eTEk Yv+dL  ++ +ym+++ + + ++  +L+ +d  ++F
     bm00447   215    VLSELVETEKMYVDDLGQIVEGYMATMAA-QGVP-ESLRGRD-RIVF 258  

                   sNiediyefhre.FLkssLearisssnfedlDekkiepsaqrlGdlFlel
                   +Ni  iye hr+ FL+ +L  ++ +              +  l++lF+++
     bm00447   259 GNIQQIYEWHRDyFLQ-ELQRCLKD--------------PDWLAQLFIKH 293  

                   kaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAk
                    ++ l +Y  Yc+nkp ++ +++         +F e+ ++++ +      
     bm00447   294 -ERRLHMYVVYCQNKPKSEHVVSE----FGDSYFEELRQQLGHR------ 332  

                   ddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkald
                        l L +LL+kPvqRi +Y+LLLk+ Lk+       ++++dL++a +
     bm00447   333 -----LQLNDLLIKPVQRIMKYQLLLKDFLKYYNR--AGMDTADLEQAVE 375  

                   alqdlaksiNe<-*
                    +  ++k+ N+   
     bm00447   376 VMCFVPKRCND    386  

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