hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-06522816/chunk_1/iprscan-20080807-06522816.nocrc
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Query sequence: bm00618
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF00538.9.ls   linker histone H1 and H5 family          152.6    9.5e-43   1
PF00538.9.fs   linker histone H1 and H5 family          150.7    3.6e-42   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF00538.9.fs     1/1     117   190 ..     1    78 []   150.7  3.6e-42
PF00538.9.ls     1/1     117   190 ..     1    78 []   152.6  9.5e-43

Alignments of top-scoring domains:
PF00538.9.fs: domain 1 of 1, from 117 to 190: score 150.7, E = 3.6e-42
                   *->sHPpyseMIvaAIaaLKERkGSSvqAIkKYIeanhYkvdpaasnlns
                      +HP+ys+MIvaAI+a K+R GSS+q I+KYI+++ Ykv+    n++s
     bm00618   117    DHPKYSDMIVAAIQAEKNRAGSSRQSIQKYIKSH-YKVGE---NADS 159  

                   hlklaLKkgVasGkLvqvKGsGASGSFKLak<-*
                   ++kl +K++V+ G+L+q+KG+GASGSF+Lak   
     bm00618   160 QIKLSIKRLVTTGVLKQTKGVGASGSFRLAK    190  

PF00538.9.ls: domain 1 of 1, from 117 to 190: score 152.6, E = 9.5e-43
                   *->sHPpyseMIvaAIaaLKERkGSSvqAIkKYIeanhYkvdpaasnlns
                      +HP+ys+MIvaAI+a K+R GSS+q I+KYI+++ Ykv+    n++s
     bm00618   117    DHPKYSDMIVAAIQAEKNRAGSSRQSIQKYIKSH-YKVGE---NADS 159  

                   hlklaLKkgVasGkLvqvKGsGASGSFKLak<-*
                   ++kl +K++V+ G+L+q+KG+GASGSF+Lak   
     bm00618   160 QIKLSIKRLVTTGVLKQTKGVGASGSFRLAK    190  

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