hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-07150873/chunk_1/iprscan-20080807-07150873.nocrc
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Query sequence: bm00740
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00069.15.fs Protein kinase domain                           72.4    1.9e-20   2
PF00069.15.ls Protein kinase domain                           61.4    2.7e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00069.15.ls   1/1     169   525 ..     1   287 []    61.4  2.7e-15
PF00069.15.fs   2/2     279   525 ..    55   287 .]    70.3  7.4e-20

Alignments of top-scoring domains:
PF00069.15.ls: domain 1 of 1, from 169 to 525: score 61.4, E = 2.7e-15
                   *->yelleklGsGsfGtVykakhkgtgk......................
                      y +++ +G+G ++ Vy+a+    +++ + +++++  ++++++++ ++
     bm00740   169    YLIGQSIGKGCSAAVYEATMPTLPQnlevtkstgllpgrgpgtsapg 215  

                   ............iVAvKiikkrkekskkdktarrl...............
                   +++++ ++ +    A+K ++  ++ s    +a++++ +++  + ++    
     bm00740   216 egqerapgapafPLAIKMMWNISAGS--SSEAILNtmsqelvpasrvala 263  

                   sEiqilkrLs..........HpNIvrlidvfed.................
                   +E       ++++++++  +HpNI+r +++f+++ +  ++   + ++  +
     bm00740   264 GEYGAVTYRKskrgpkqlapHPNIIRVLRAFTSsvpllpgalvdypdvlp 313  

                   ..........kdhlylVlEycegGLrvldLfdylsetrrkgpll.fsede
                   ++ ++++ ++++ l lV+   ++      L        ++ ++ + s++ 
     bm00740   314 srlhpeglghGRTLFLVMKNYPC-----TLR-------QYLCVNtPSPRL 351  

                   akkialQilrgleYLHsngiiHRDLKPeNILldnngvvdaflKiaDFGlA
                   a +++lQ+l+g+++L ++gi HRDLK++NIL+  +++ ++ l iaDFG++
     bm00740   352 AAMMLLQLLEGVDHLVQQGIAHRDLKSDNILVELDPDGCPWLVIADFGCC 401  

                   kkls......t.sss.lttfvGTpwYmAPEvll.....ggngygtkvDvW
                    +++++ + +++ ss + ++ G    mAPEv   ++++ +  + +k+D W
     bm00740   402 -LADesiglqLpFSSwYVDRGGNGCLMAPEVSTarpgpRAVIDYSKADAW 450  

                   SlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspewdsis
                   ++G i ye +    PF+g+   + + +   +++   p l+++ p      
     bm00740   451 AVGAIAYEIFGLVNPFYGQ--GKaHLESRSYQEAQLPALPESVP------ 492  

                   rsefrrlpnlseeakdLikkcLnkDPskRlt...aeeilqHPwf<-*
                              ++ ++L++ +L++  skR++ + a+ +l+   +   
     bm00740   493 -----------PDVRQLVRALLQREASKRPSarvAANVLHLSLW    525  

PF00069.15.fs: domain 2 of 2, from 279 to 525: score 70.3, E = 7.4e-20
                   *->krL.sHpNIvrlidvfed...........................kd
                      k L  HpNI+r +++f+++ +  ++   + ++  +++ ++++ ++++
     bm00740   279    KQLaPHPNIIRVLRAFTSsvpllpgalvdypdvlpsrlhpeglghGR 325  

                   hlylVlEycegGLrvldLfdylsetrrkgpll.fsedeakkialQilrgl
                    l lV+   ++      L        ++ ++ + s++ a +++lQ+l+g+
     bm00740   326 TLFLVMKNYPC-----TLR-------QYLCVNtPSPRLAAMMLLQLLEGV 363  

                   eYLHsngiiHRDLKPeNILldnngvvdaflKiaDFGlAkkls......t.
                   ++L ++gi HRDLK++NIL+  +++ ++ l iaDFG++ +++++ + +++
     bm00740   364 DHLVQQGIAHRDLKSDNILVELDPDGCPWLVIADFGCC-LADesiglqLp 412  

                   sss.lttfvGTpwYmAPEvll.....ggngygtkvDvWSlGvilyelltG
                    ss + ++ G    mAPEv   ++++ +  + +k+D W++G i ye +  
     bm00740   413 FSSwYVDRGGNGCLMAPEVSTarpgpRAVIDYSKADAWAVGAIAYEIFGL 462  

                   kpPFsgevqds.ldqlqlirkilgpplefdspewdsisrsefrrlpnlse
                     PF+g+   + + +   +++   p l+++ p                 +
     bm00740   463 VNPFYGQ--GKaHLESRSYQEAQLPALPESVP-----------------P 493  

                   eakdLikkcLnkDPskRlt...aeeilqHPwf<-*
                   + ++L++ +L++  skR++ + a+ +l+   +   
     bm00740   494 DVRQLVRALLQREASKRPSarvAANVLHLSLW    525  

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