hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-07150873/chunk_1/iprscan-20080807-07150873.nocrc
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Query sequence: bm00740
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                  49.4    8.5e-13   1
SM00219                                                -101.4    7.3e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1     169   520 ..     1   280 []  -101.4  7.3e-05
SM00220    1/1     169   524 ..     1   231 []    49.4  8.5e-13

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 169 to 520: score -101.4, E = 7.3e-05
                   *->ltlgkkLGeGaFGeVykGtlk..........................
                         g+ +G G+   Vy++t+ + +++ + +++++  ++++++++ ++
     bm00740   169    YLIGQSIGKGCSAAVYEATMPtlpqnlevtkstgllpgrgpgtsapg 215  

                   ...........ieVAVKtLkeda....................keeFlrE
                   +++++ ++ +  + A+K++ + + +++++   ++ +++  + ++ ++  E
     bm00740   216 egqerapgapaFPLAIKMMWNISagssseailntmsqelvpasRVALAGE 265  

                   akiM.........kklGgkHpNiVkLlGvcteegrrFmevePlmivmEym
                       + +++++++k+l   HpNi++ l + t++        Pl+      
     bm00740   266 YGAVtyrkskrgpKQL-APHPNIIRVLRAFTSS-------VPLL------ 301  

                   egGdLldy...Lrknrpk............................lsls
                     G+L dy++ L ++ + ++ +++++     ++ + + ++    ++ s++
     bm00740   302 -PGALVDYpdvLPSRLHPeglghgrtlflvmknypctlrqylcvntPSPR 350  

                   dLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk.....vvKIsDFG
                       + lQ  +G ++L ++++ HRDL   N+Lv  + ++ +  v I+DFG
     bm00740   351 LAAMMLLQLLEGVDHLVQQGIAHRDLKSDNILVELDPdgcpwLV-IADFG 399  

                   LsRdlyddDkkG....eskdyYrkkggkggktllPirWmAPEsl......
                    + + ++    G + + s+ y +     gg++ l    mAPE+ + ++++
     bm00740   400 CCLADESI---GlqlpFSSWYVDR----GGNGCL----MAPEVStarpgp 438  

                   kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGy
                   +  +  sk D W+ G   +Eif l   P +g        +++  +  +  
     bm00740   439 RAVIDYSKADAWAVGAIAYEIFGL-VNPFYG-----QGKAHLESRSYQEA 482  

                   RlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                    lp  ++         P+++ +l +   ++++++RP+ +     l   
     bm00740   483 QLPALPE-------SVPPDVRQLVRALLQREASKRPSARVAANVL    520  

SM00220: domain 1 of 1, from 169 to 524: score 49.4, E = 8.5e-13
                   *->YellkklGkGaFGkVylardkk.........................
                      Y +++ +GkG  + Vy a+    +++ + +++++  ++++++++ ++
     bm00740   169    YLIGQSIGKGCSAAVYEATMPTlpqnlevtkstgllpgrgpgtsapg 215  

                   .........tgrlvAiKvik........................erilrE
                   +++++ ++      AiK++ + + +++++   ++ +++  + ++  +  E
     bm00740   216 egqerapgaPAFPLAIKMMWnisagssseailntmsqelvpasrVALAGE 265  

                   ikiLkk...........dHPNIVkLydvfed...................
                         +++++++++   HPNI++ + +f ++ +  ++   + ++  +++
     bm00740   266 YGAVTYrkskrgpkqlaPHPNIIRVLRAFTSsvpllpgalvdypdvlpsr 315  

                   .........dklylVmEyceGdlGdLfdllkkrgrrglrkvlsE.earfy
                    ++++ +++  l+lVm   +    +L+++l+ + +       s++ a+ +
     bm00740   316 lhpeglghgRTLFLVMKNYPC---TLRQYLCVNTP-------SPrLAAMM 355  

                   frQilsaLeYLHsqgIiHRDLKPeNiLLds......hvKlaDFGlArql.
                   + Q+l+++++L +qgI HRDLK +NiL+  ++++ + + +aDFG +   +
     bm00740   356 LLQLLEGVDHLVQQGIAHRDLKSDNILVELdpdgcpWLVIADFGCCLADe 405  

                   ............ttfvGTpeYmAPEvl..........gYgkpavDiWSlG
                   + + + + ++      G    mAPEv + +++++    Y+  ++D W++G
     bm00740   406 siglqlpfsswyVDRGGNGCLMAPEVStarpgpraviDYS--KADAWAVG 453  

                   cilyElltGkpPFp......qldlifkkig........SpeakdLikklL
                    i yE +    PF+++++ + + + ++    +  +++ +p++++L++ lL
     bm00740   454 AIAYEIFGLVNPFYgqgkahLESRSYQEAQlpalpesvPPDVRQLVRALL 503  

                   vkdPekRlta.eaLedeldikaHPff<-*
                   +++ +kR++a+ a +      +H  +   
     bm00740   504 QREASKRPSArVAAN-----VLHLSL    524  

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