hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-07202992/chunk_1/iprscan-20080807-07202992.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm00750 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00209.9.ls Sodium:neurotransmitter symporter family 1295.9 0 1 PF00209.9.fs Sodium:neurotransmitter symporter family 1293.9 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00209.9.fs 1/1 71 606 .. 1 624 [] 1293.9 0 PF00209.9.ls 1/1 71 606 .. 1 624 [] 1295.9 0 Alignments of top-scoring domains: PF00209.9.fs: domain 1 of 1, from 71 to 606: score 1293.9, E = 0 *->RetWsgKldFlLSvvGfaVGLGNVWRFPYLCYKNGGGAFLIPYlifL RetW++++dF++S+vGfaVGLGNVWRFPYLCYKNGGG+FLIPY++++ bm00750 71 RETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYVLIA 117 ivaGIPLFFLElaLGQytreGaitvWrkICPlFkGiGYAsivivfyvgiY +v+GIP+FFLE++LGQ+++ G+i+vW+ ICPlFkG GYAs+vivfy+++Y bm00750 118 LVGGIPIFFLEISLGQFMKAGSINVWN-ICPLFKGLGYASMVIVFYCNTY 166 YnVIiAWAlyYLfsSFTteLPWasCnnsWNtprCveefdkenssngslpa Y++++AW++yYL++SFTt+LPWa+C+++WNtp+Cve+f++e+++n+sl++ bm00750 167 YIMVLAWGFYYLVKSFTTTLPWATCGHTWNTPDCVEIFRHEDCANASLAN 216 ltavnlsnlssyslertSPveEFWeRgVLhlHeSsGIsdlGelrWeLtlC lt+++l++ r+SPv+EFWe++VL+l S G++ +G+l+We+tlC bm00750 217 LTCDQLAD-------RRSPVIEFWENKVLRL--SGGLEVPGALNWEVTLC 257 LllaWvvvyFciwKGVKssGKVVYFTATFPYvvLlvLLvRGvTLPGAadG Ll++Wv+vyFc+wKGVKs+GK+VYFTATFPYvvL+vLLvRGv+LPGA dG bm00750 258 LLACWVLVYFCVWKGVKSTGKIVYFTATFPYVVLVVLLVRGVLLPGALDG 307 IkfYLtPdfskLldPqVWiDAAtQIFFSLGiGfGvLiAfaSYNkfhNNcY I++YL+Pd+skL +PqVWiDA+tQIFFS++iG+G+L+A++SYN+f+NNcY bm00750 308 IIYYLKPDWSKLGSPQVWIDAGTQIFFSYAIGLGALTALGSYNRFNNNCY 357 rDaiivsfiNsaTSflAGFVIFSiLGFMANIvqeqGveNaEkILlLsvlS +TSf+AGFV+FSiLGFMA eqGv bm00750 358 N----------GTSFFAGFVVFSILGFMA---AEQGV------------- 381 rDlIprHvNlSalTaDYsvYdvIseVAeseFavLgLaCllEDELdKaVQG + Is+VAes G bm00750 382 ----H-----------------ISKVAES--------------------G 390 PGLAFIAYPeAvTmlPlSpfWsvLFFlMLltLGLDSqFggvEgiITAlvD PGLAFIAYP+AvT++P++p+W+ LFF+MLl+LGLDSqF+gvEg+IT+l+D bm00750 391 PGLAFIAYPRAVTLMPVAPLWAALFFFMLLLLGLDSQFVGVEGFITGLLD 440 efprvlrlkkrRElftllvcvisfliGLlmvTeGGiYvftLfDyYaAsGf +p++++++++RE+ ++l+c+++f+i+L+mvT+GG+Yvf+LfDyY+AsG+ bm00750 441 LLPASYYFRFQREISVALCCALCFVIDLSMVTDGGMYVFQLFDYYSASGT 490 sLLfvvffEciavaWvYGidrFyddIkeMlGFrPglywklCWkfvSPlil +LL+++f+Ec++vaWvYG+drF+ddI +M+G+rP++++k+CW+f++Pl++ bm00750 491 TLLWQAFWECVVVAWVYGADRFMDDIACMIGYRPCPWMKWCWSFFTPLVC 540 lflfifsivqyGlkPltYnnvIKEAaEryYvYPnWavalGWlmALSSmlc +++fif++v+y Pl Ynn+ YvYP+W++a+GW++ALSSmlc bm00750 541 MGIFIFNVVYY--EPLVYNNT--------YVYPWWGEAMGWAFALSSMLC 580 iPlymiykllstkGdslkerlqqlttP<-* +Pl+ + +ll++kG +++er+q+lt+P bm00750 581 VPLHLLGCLLRAKG-TMAERWQHLTQP 606 PF00209.9.ls: domain 1 of 1, from 71 to 606: score 1295.9, E = 0 *->RetWsgKldFlLSvvGfaVGLGNVWRFPYLCYKNGGGAFLIPYlifL RetW++++dF++S+vGfaVGLGNVWRFPYLCYKNGGG+FLIPY++++ bm00750 71 RETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYVLIA 117 ivaGIPLFFLElaLGQytreGaitvWrkICPlFkGiGYAsivivfyvgiY +v+GIP+FFLE++LGQ+++ G+i+vW+ ICPlFkG GYAs+vivfy+++Y bm00750 118 LVGGIPIFFLEISLGQFMKAGSINVWN-ICPLFKGLGYASMVIVFYCNTY 166 YnVIiAWAlyYLfsSFTteLPWasCnnsWNtprCveefdkenssngslpa Y++++AW++yYL++SFTt+LPWa+C+++WNtp+Cve+f++e+++n+sl++ bm00750 167 YIMVLAWGFYYLVKSFTTTLPWATCGHTWNTPDCVEIFRHEDCANASLAN 216 ltavnlsnlssyslertSPveEFWeRgVLhlHeSsGIsdlGelrWeLtlC lt+++l++ r+SPv+EFWe++VL+l S G++ +G+l+We+tlC bm00750 217 LTCDQLAD-------RRSPVIEFWENKVLRL--SGGLEVPGALNWEVTLC 257 LllaWvvvyFciwKGVKssGKVVYFTATFPYvvLlvLLvRGvTLPGAadG Ll++Wv+vyFc+wKGVKs+GK+VYFTATFPYvvL+vLLvRGv+LPGA dG bm00750 258 LLACWVLVYFCVWKGVKSTGKIVYFTATFPYVVLVVLLVRGVLLPGALDG 307 IkfYLtPdfskLldPqVWiDAAtQIFFSLGiGfGvLiAfaSYNkfhNNcY I++YL+Pd+skL +PqVWiDA+tQIFFS++iG+G+L+A++SYN+f+NNcY bm00750 308 IIYYLKPDWSKLGSPQVWIDAGTQIFFSYAIGLGALTALGSYNRFNNNCY 357 rDaiivsfiNsaTSflAGFVIFSiLGFMANIvqeqGveNaEkILlLsvlS +TSf+AGFV+FSiLGFMA eqGv bm00750 358 N----------GTSFFAGFVVFSILGFMA---AEQGV------------- 381 rDlIprHvNlSalTaDYsvYdvIseVAeseFavLgLaCllEDELdKaVQG + Is+VAes G bm00750 382 ----H-----------------ISKVAES--------------------G 390 PGLAFIAYPeAvTmlPlSpfWsvLFFlMLltLGLDSqFggvEgiITAlvD PGLAFIAYP+AvT++P++p+W+ LFF+MLl+LGLDSqF+gvEg+IT+l+D bm00750 391 PGLAFIAYPRAVTLMPVAPLWAALFFFMLLLLGLDSQFVGVEGFITGLLD 440 efprvlrlkkrRElftllvcvisfliGLlmvTeGGiYvftLfDyYaAsGf +p++++++++RE+ ++l+c+++f+i+L+mvT+GG+Yvf+LfDyY+AsG+ bm00750 441 LLPASYYFRFQREISVALCCALCFVIDLSMVTDGGMYVFQLFDYYSASGT 490 sLLfvvffEciavaWvYGidrFyddIkeMlGFrPglywklCWkfvSPlil +LL+++f+Ec++vaWvYG+drF+ddI +M+G+rP++++k+CW+f++Pl++ bm00750 491 TLLWQAFWECVVVAWVYGADRFMDDIACMIGYRPCPWMKWCWSFFTPLVC 540 lflfifsivqyGlkPltYnnvIKEAaEryYvYPnWavalGWlmALSSmlc +++fif++v+y Pl Ynn+ YvYP+W++a+GW++ALSSmlc bm00750 541 MGIFIFNVVYY--EPLVYNNT--------YVYPWWGEAMGWAFALSSMLC 580 iPlymiykllstkGdslkerlqqlttP<-* +Pl+ + +ll++kG +++er+q+lt+P bm00750 581 VPLHLLGCLLRAKG-TMAERWQHLTQP 606 //