# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm00752.fasta.nr -Q bm00752.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm00752, 465 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6822187 sequences Expectation_n fit: rho(ln(x))= 5.5296+/-0.000192; mu= 10.6529+/- 0.011 mean_var=89.4037+/-17.122, 0's: 37 Z-trim: 43 B-trim: 180 in 1/65 Lambda= 0.135643 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|2497442|sp|Q14653|IRF3_HUMAN Interferon regulat ( 427) 3028 602.3 6.4e-170 gi|119572895|gb|EAW52510.1| interferon regulatory ( 427) 3025 601.8 9.7e-170 gi|189069374|dbj|BAG37040.1| unnamed protein produ ( 427) 3024 601.6 1.1e-169 gi|109125562|ref|XP_001115379.1| PREDICTED: interf ( 422) 2801 557.9 1.5e-156 gi|183238836|gb|ACC60989.1| interferon regulatory ( 426) 2552 509.2 7e-142 gi|12653749|gb|AAH00660.1| IRF3 protein [Homo sapi ( 452) 2343 468.3 1.5e-129 gi|14424770|gb|AAH09395.1| IRF3 protein [Homo sapi ( 452) 2343 468.3 1.5e-129 gi|163141076|gb|ABY26589.1| interferon regulatory ( 419) 2289 457.7 2.2e-126 gi|75053356|sp|Q764M6|IRF3_PIG Interferon regulato ( 419) 2278 455.6 9.6e-126 gi|194215786|ref|XP_001917797.1| PREDICTED: simila ( 423) 2251 450.3 3.8e-124 gi|71564269|gb|AAZ38325.1| interferon regulatory f ( 417) 2233 446.8 4.3e-123 gi|88909161|sp|Q4JF28|IRF3_BOVIN Interferon regula ( 417) 2204 441.1 2.2e-121 gi|53733561|gb|AAH83776.1| Interferon regulatory f ( 421) 2121 424.8 1.7e-116 gi|2497443|sp|P70671|IRF3_MOUSE Interferon regulat ( 419) 2038 408.6 1.3e-111 gi|74226970|dbj|BAE27126.1| unnamed protein produc ( 419) 2026 406.3 6.7e-111 gi|73947954|ref|XP_533616.2| PREDICTED: similar to ( 383) 1980 397.2 3.2e-108 gi|38492946|pdb|1QWT|A Chain A, Auto-Inhibitory In ( 255) 1806 363.0 4.2e-98 gi|39654072|pdb|1J2F|A Chain A, X-Ray Crystal Stru ( 258) 1791 360.1 3.3e-97 gi|58737015|dbj|BAD89416.1| interferon regulatory ( 300) 1422 287.9 2e-75 gi|93278591|pdb|1ZOQ|A Chain A, Irf3-Cbp Complex ( 191) 1371 277.8 1.4e-72 gi|148690837|gb|EDL22784.1| interferon regulatory ( 256) 1172 239.0 9.5e-61 gi|157835485|pdb|2O6G|E Chain E, Crystal Structure ( 123) 874 180.4 2e-43 gi|159795073|pdb|2PI0|A Chain A, Crystal Structure ( 116) 810 167.8 1.1e-39 gi|114678377|ref|XP_001157487.1| PREDICTED: interf ( 217) 807 167.5 2.7e-39 gi|56966030|pdb|1T2K|A Chain A, Structure Of The D ( 112) 797 165.3 6.3e-39 gi|157835481|pdb|2O61|A Chain A, Crystal Structure ( 540) 774 161.3 4.6e-37 gi|58737013|dbj|BAD89415.1| interferon regulatory ( 154) 688 144.1 2.1e-32 gi|189525730|ref|XP_693269.2| PREDICTED: similar t ( 401) 625 132.1 2.2e-28 gi|126330107|ref|XP_001379797.1| PREDICTED: simila ( 478) 613 129.8 1.3e-27 gi|2149471|gb|AAC68818.1| interferon regulatory fa ( 86) 586 123.9 1.4e-26 gi|27728746|gb|AAO18646.1| interferon regulator fa ( 421) 563 120.0 1e-24 gi|112790137|gb|ABI21828.1| interferon regulatory ( 89) 526 112.2 4.9e-23 gi|149055998|gb|EDM07429.1| interferon regulatory ( 94) 521 111.2 1e-22 gi|114635408|ref|XP_001147267.1| PREDICTED: interf ( 439) 513 110.2 9.4e-22 gi|114635404|ref|XP_508200.2| PREDICTED: interfero ( 426) 508 109.2 1.8e-21 gi|148686077|gb|EDL18024.1| interferon regulatory ( 425) 486 104.9 3.6e-20 gi|14165239|gb|AAK55444.1|AF380350_1 interferon re ( 416) 485 104.7 4e-20 gi|2674205|gb|AAC68814.1| interferon regulatory fa ( 83) 474 102.0 5.3e-20 gi|74204777|dbj|BAE35453.1| unnamed protein produc ( 426) 481 103.9 7e-20 gi|189069272|dbj|BAG36304.1| unnamed protein produ ( 426) 480 103.7 8.1e-20 gi|2497450|sp|Q90871|IRF8_CHICK Interferon regulat ( 425) 478 103.3 1.1e-19 gi|114663973|ref|XP_001154894.1| PREDICTED: interf ( 448) 477 103.2 1.3e-19 gi|6016308|sp|Q02556|IRF8_HUMAN Interferon regulat ( 426) 476 102.9 1.4e-19 gi|114663977|ref|XP_001155056.1| PREDICTED: interf ( 426) 474 102.5 1.8e-19 gi|114663975|ref|XP_511152.2| PREDICTED: interfero ( 436) 474 102.6 1.9e-19 gi|47217076|emb|CAG02387.1| unnamed protein produc ( 475) 474 102.6 2e-19 gi|74139864|dbj|BAE31775.1| unnamed protein produc ( 424) 473 102.4 2.1e-19 gi|55732601|emb|CAH93000.1| hypothetical protein [ ( 426) 471 102.0 2.7e-19 gi|109129424|ref|XP_001084409.1| PREDICTED: simila ( 426) 469 101.6 3.6e-19 gi|124146|sp|P23611|IRF8_MOUSE Interferon regulato ( 424) 464 100.6 7e-19 >>gi|2497442|sp|Q14653|IRF3_HUMAN Interferon regulatory (427 aa) initn: 3028 init1: 3028 opt: 3028 Z-score: 3205.7 bits: 602.3 E(): 6.4e-170 Smith-Waterman score: 3028; 100.000% identity (100.000% similar) in 427 aa overlap (39-465:1-427) 10 20 30 40 50 60 bm0075 KEVWVRKLQARWVRGRPVAPRKCPIRAGRTMGTPKPRILPWLVSQLDLGQLEGVAWVNKS :::::::::::::::::::::::::::::: gi|249 MGTPKPRILPWLVSQLDLGQLEGVAWVNKS 10 20 30 70 80 90 100 110 120 bm0075 RTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|249 RTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGL 40 50 60 70 80 90 130 140 150 160 170 180 bm0075 RLAEDRSKDPHDPHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|249 RLAEDRSKDPHDPHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLA 100 110 120 130 140 150 190 200 210 220 230 240 bm0075 PLPDPGPPSLAVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|249 PLPDPGPPSLAVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFY 160 170 180 190 200 210 250 260 270 280 290 300 bm0075 RGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|249 RGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGG 220 230 240 250 260 270 310 320 330 340 350 360 bm0075 GLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|249 GLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLI 280 290 300 310 320 330 370 380 390 400 410 420 bm0075 TFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLENT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|249 TFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLENT 340 350 360 370 380 390 430 440 450 460 bm0075 VDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGES ::::::::::::::::::::::::::::::::::::: gi|249 VDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGES 400 410 420 >>gi|119572895|gb|EAW52510.1| interferon regulatory fact (427 aa) initn: 3080 init1: 3025 opt: 3025 Z-score: 3202.6 bits: 601.8 E(): 9.7e-170 Smith-Waterman score: 3025; 99.766% identity (100.000% similar) in 427 aa overlap (39-465:1-427) 10 20 30 40 50 60 bm0075 KEVWVRKLQARWVRGRPVAPRKCPIRAGRTMGTPKPRILPWLVSQLDLGQLEGVAWVNKS :::::::::::::::::::::::::::::: gi|119 MGTPKPRILPWLVSQLDLGQLEGVAWVNKS 10 20 30 70 80 90 100 110 120 bm0075 RTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGL 40 50 60 70 80 90 130 140 150 160 170 180 bm0075 RLAEDRSKDPHDPHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RLAEDRSKDPHDPHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLA 100 110 120 130 140 150 190 200 210 220 230 240 bm0075 PLPDPGPPSLAVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PLPDPGPPSLAVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFY 160 170 180 190 200 210 250 260 270 280 290 300 bm0075 RGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGG 220 230 240 250 260 270 310 320 330 340 350 360 bm0075 GLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLI 280 290 300 310 320 330 370 380 390 400 410 420 bm0075 TFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLENT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLENT 340 350 360 370 380 390 430 440 450 460 bm0075 VDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGES ::::::::::::::::::::::::::::::::::::. gi|119 VDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGET 400 410 420 >>gi|189069374|dbj|BAG37040.1| unnamed protein product [ (427 aa) initn: 3024 init1: 3024 opt: 3024 Z-score: 3201.5 bits: 601.6 E(): 1.1e-169 Smith-Waterman score: 3024; 99.766% identity (100.000% similar) in 427 aa overlap (39-465:1-427) 10 20 30 40 50 60 bm0075 KEVWVRKLQARWVRGRPVAPRKCPIRAGRTMGTPKPRILPWLVSQLDLGQLEGVAWVNKS :::::::::::::::::::::::::::::: gi|189 MGTPKPRILPWLVSQLDLGQLEGVAWVNKS 10 20 30 70 80 90 100 110 120 bm0075 RTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 RTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGL 40 50 60 70 80 90 130 140 150 160 170 180 bm0075 RLAEDRSKDPHDPHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 RLAEDRSKDPHDPHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLA 100 110 120 130 140 150 190 200 210 220 230 240 bm0075 PLPDPGPPSLAVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFY :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|189 PLPDPGPPSLAVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLFVPGEEWEFEVTAFY 160 170 180 190 200 210 250 260 270 280 290 300 bm0075 RGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 RGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGG 220 230 240 250 260 270 310 320 330 340 350 360 bm0075 GLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 GLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLI 280 290 300 310 320 330 370 380 390 400 410 420 bm0075 TFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLENT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 TFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLENT 340 350 360 370 380 390 430 440 450 460 bm0075 VDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGES ::::::::::::::::::::::::::::::::::::: gi|189 VDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGES 400 410 420 >>gi|109125562|ref|XP_001115379.1| PREDICTED: interferon (422 aa) initn: 1970 init1: 1123 opt: 2801 Z-score: 2965.7 bits: 557.9 E(): 1.5e-156 Smith-Waterman score: 2801; 94.614% identity (96.956% similar) in 427 aa overlap (39-465:1-422) 10 20 30 40 50 60 bm0075 KEVWVRKLQARWVRGRPVAPRKCPIRAGRTMGTPKPRILPWLVSQLDLGQLEGVAWVNKS ::::::::::::::::::::::::::::.: gi|109 MGTPKPRILPWLVSQLDLGQLEGVAWVNES 10 20 30 70 80 90 100 110 120 bm0075 RTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGL :::::::::::::::::.::: :::::::::::::::::::::::::::::::::::.:: gi|109 RTRFRIPWKHGLRQDAQEEDFRIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKDGL 40 50 60 70 80 90 130 140 150 160 170 180 bm0075 RLAEDRSKDPHDPHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLA ::::::::::::::::::::::::::::::.:::::::::::::::.:::::::::::: gi|109 CLAEDRSKDPHDPHKIYEFVNSGVGDFSQPDSSPDTNGGGSTSDTQENILDELLGNMVLA 100 110 120 130 140 150 190 200 210 220 230 240 bm0075 PLPDPGPPSLAVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFY :::::::::::::: : :.:::::.::::::: :::::::::::::::::::::::: gi|109 PLPDPGPPSLAVAP----QHLQSPSLDSPTPFPNLEPSENPLKRLLVPGEEWEFEVTAFY 160 170 180 190 200 250 260 270 280 290 300 bm0075 RGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGG ::::::::::::::::::::::::::::::::.::::::::::::::::::::::: ::: gi|109 RGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPITLPDPGMSLTDRGVMSYVRHVLSSLGG 210 220 230 240 250 260 310 320 330 340 350 360 bm0075 GLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLI :::: :::: :::::::::::::::::::: ::::::::::::::::::::::::::::: gi|109 GLALRRAGQRLWAQRLGHCHTYWAVSEELL-NSGHGPDGEVPKDKEGGVFDLGPFIVDLI 270 280 290 300 310 320 370 380 390 400 410 420 bm0075 TFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLENT :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|109 TFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEIARVGGASSLENT 330 340 350 360 370 380 430 440 450 460 bm0075 VDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGES ::::::::::::::::::::::::::: ::::::::. gi|109 VDLHISNSHPLSLTSDQYKAYLQDLVEDMDFQGPGET 390 400 410 420 >>gi|183238836|gb|ACC60989.1| interferon regulatory fact (426 aa) initn: 1673 init1: 1673 opt: 2552 Z-score: 2702.3 bits: 509.2 E(): 7e-142 Smith-Waterman score: 2552; 83.372% identity (94.145% similar) in 427 aa overlap (39-465:1-426) 10 20 30 40 50 60 bm0075 KEVWVRKLQARWVRGRPVAPRKCPIRAGRTMGTPKPRILPWLVSQLDLGQLEGVAWVNKS ::::::::::::::::::::::::::.. : gi|183 MGTPKPRILPWLVSQLDLGQLEGVAWLDGS 10 20 30 70 80 90 100 110 120 bm0075 RTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGL : ::::::::::::::::::::::::::::.:::.::.:::::::::::::::::::: : gi|183 RKRFRIPWKHGLRQDAQQEDFGIFQAWAEASGAYTPGKDKPDLPTWKRNFRSALNRKEVL 40 50 60 70 80 90 130 140 150 160 170 180 bm0075 RLAEDRSKDPHDPHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLA ::::::::::::::::::::..:.::::: ::::::.::::::::::::: :::..:.:: gi|183 RLAEDRSKDPHDPHKIYEFVSTGAGDFSQVDTSPDTSGGGSTSDTQEDIL-ELLNDMILA 100 110 120 130 140 190 200 210 220 230 240 bm0075 PLPDPGPPSLAVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFY :.:: :::.:.:.:: : : : ::.:.:: : :::.: :::::::::: :.::.:::::: gi|183 PVPDTGPPGLGVVPEHCSQLLLSPNLENPMPCPNLAPPENPLKRLLVPEEQWEYEVTAFY 150 160 170 180 190 200 250 260 270 280 290 300 bm0075 RGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGG :::::::.:: :: ::::::::.::::::: :.::::::.::::::::.::..::::::: gi|183 RGRQVFQKTIFCPGGLRLVGSEAGDRTLPGQPITLPDPGVSLTDRGVMGYVKRVLSCLGG 210 220 230 240 250 260 310 320 330 340 350 360 bm0075 GLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLI ::::::.:: :::.::::::.::::.:::.:..::: :::::::..: :::::::..::: gi|183 GLALWRSGQRLWARRLGHCHAYWAVGEELFPDNGHGHDGEVPKDNDGVVFDLGPFVADLI 270 280 290 300 310 320 370 380 390 400 410 420 bm0075 TFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLENT .: ::: :::::.::::.:::::::.::.::::::::::::::::..::: :::: :::: gi|183 SFMEGSRRSPRYTLWFCIGESWPQDKPWVKRLVMVKVVPTCLRALLDMARSGGASPLENT 330 340 350 360 370 380 430 440 450 460 bm0075 VDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGES ::::::::::::::::::::::::::: ::::::::: gi|183 VDLHISNSHPLSLTSDQYKAYLQDLVEDMDFQGPGES 390 400 410 420 >>gi|12653749|gb|AAH00660.1| IRF3 protein [Homo sapiens] (452 aa) initn: 2343 init1: 2343 opt: 2343 Z-score: 2480.9 bits: 468.3 E(): 1.5e-129 Smith-Waterman score: 2343; 100.000% identity (100.000% similar) in 327 aa overlap (39-365:1-327) 10 20 30 40 50 60 bm0075 KEVWVRKLQARWVRGRPVAPRKCPIRAGRTMGTPKPRILPWLVSQLDLGQLEGVAWVNKS :::::::::::::::::::::::::::::: gi|126 MGTPKPRILPWLVSQLDLGQLEGVAWVNKS 10 20 30 70 80 90 100 110 120 bm0075 RTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 RTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGL 40 50 60 70 80 90 130 140 150 160 170 180 bm0075 RLAEDRSKDPHDPHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 RLAEDRSKDPHDPHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLA 100 110 120 130 140 150 190 200 210 220 230 240 bm0075 PLPDPGPPSLAVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 PLPDPGPPSLAVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFY 160 170 180 190 200 210 250 260 270 280 290 300 bm0075 RGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 RGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGG 220 230 240 250 260 270 310 320 330 340 350 360 bm0075 GLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLI ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 GLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVGSW 280 290 300 310 320 330 370 380 390 400 410 420 bm0075 TFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLENT gi|126 APRSDYLHGRKRTLTTLCPLVLCGGVMAPGPAVDQEARDGQGCAHVPQGLGRNGPGRGCL 340 350 360 370 380 390 >>gi|14424770|gb|AAH09395.1| IRF3 protein [Homo sapiens] (452 aa) initn: 2343 init1: 2343 opt: 2343 Z-score: 2480.9 bits: 468.3 E(): 1.5e-129 Smith-Waterman score: 2343; 100.000% identity (100.000% similar) in 327 aa overlap (39-365:1-327) 10 20 30 40 50 60 bm0075 KEVWVRKLQARWVRGRPVAPRKCPIRAGRTMGTPKPRILPWLVSQLDLGQLEGVAWVNKS :::::::::::::::::::::::::::::: gi|144 MGTPKPRILPWLVSQLDLGQLEGVAWVNKS 10 20 30 70 80 90 100 110 120 bm0075 RTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|144 RTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGL 40 50 60 70 80 90 130 140 150 160 170 180 bm0075 RLAEDRSKDPHDPHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|144 RLAEDRSKDPHDPHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLA 100 110 120 130 140 150 190 200 210 220 230 240 bm0075 PLPDPGPPSLAVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|144 PLPDPGPPSLAVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFY 160 170 180 190 200 210 250 260 270 280 290 300 bm0075 RGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|144 RGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGG 220 230 240 250 260 270 310 320 330 340 350 360 bm0075 GLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLI ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|144 GLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVGSW 280 290 300 310 320 330 370 380 390 400 410 420 bm0075 TFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLENT gi|144 APRSDYLHGRKRTLTTLCPLVLCGGVMAPGPAVDQEARDGQGCAHVPQGLGRNGPGRGCL 340 350 360 370 380 390 >>gi|163141076|gb|ABY26589.1| interferon regulatory fact (419 aa) initn: 1443 init1: 1443 opt: 2289 Z-score: 2424.3 bits: 457.7 E(): 2.2e-126 Smith-Waterman score: 2289; 78.147% identity (89.311% similar) in 421 aa overlap (39-459:1-419) 10 20 30 40 50 60 bm0075 KEVWVRKLQARWVRGRPVAPRKCPIRAGRTMGTPKPRILPWLVSQLDLGQLEGVAWVNKS ::: ::::::::.:::. ::::::::.... gi|163 MGTQKPRILPWLISQLNQGQLEGVAWLDEG 10 20 30 70 80 90 100 110 120 bm0075 RTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGL .:::::::::::::::::::::::::::::.:::.::.::::::::::::::::::::.: gi|163 HTRFRIPWKHGLRQDAQQEDFGIFQAWAEASGAYTPGKDKPDLPTWKRNFRSALNRKEAL 40 50 60 70 80 90 130 140 150 160 170 180 bm0075 RLAEDRSKDPHDPHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLA :::::.::::::::::::::.:::::: .:::: : .: :::::.:: ::.::..: :: gi|163 RLAEDHSKDPHDPHKIYEFVTSGVGDFPEPDTSLDLSGRYSTSDTHEDSLDKLLSGMDLA 100 110 120 130 140 150 190 200 210 220 230 240 bm0075 PLPDPGPPSLAVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFY : :::::..: : :: :::.: :. :::: :::::.::. .::::.::.:: gi|163 S--DAGPPSLTLALEQPPQLSLSPSVDAPASCPNLGVRENPLKQLLANDDEWEFQVTVFY 160 170 180 190 200 250 260 270 280 290 300 bm0075 RGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGG :: ::::::. : ::::::::. : :: : :: ::::. ::::::: .:::.::::::: gi|163 RGCQVFQQTVCSPGGLRLVGSEAEDGTLAGQPVRLPDPAASLTDRGVADYVRRVLSCLGG 210 220 230 240 250 260 310 320 330 340 350 360 bm0075 GLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLI ::::::::::::::::::::.:::..:::.:.::: ::::::::.::::::::::: ::: gi|163 GLALWRAGQWLWAQRLGHCHVYWAMGEELIPDSGHKPDGEVPKDREGGVFDLGPFIEDLI 270 280 290 300 310 320 370 380 390 400 410 420 bm0075 TFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLENT .: ::: :::::.::::.:.:::::.::.:::::::::: ::::::.::: ::::::::: gi|163 AFIEGSRRSPRYTLWFCMGQSWPQDEPWVKRLVMVKVVPMCLRALVDMARDGGASSLENT 330 340 350 360 370 380 430 440 450 460 bm0075 VDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGES :::::::::::::::::::: :.:::: ::: gi|163 VDLHISNSHPLSLTSDQYKACLRDLVEDMDF 390 400 410 >>gi|75053356|sp|Q764M6|IRF3_PIG Interferon regulatory f (419 aa) initn: 1432 init1: 1432 opt: 2278 Z-score: 2412.6 bits: 455.6 E(): 9.6e-126 Smith-Waterman score: 2278; 77.910% identity (89.074% similar) in 421 aa overlap (39-459:1-419) 10 20 30 40 50 60 bm0075 KEVWVRKLQARWVRGRPVAPRKCPIRAGRTMGTPKPRILPWLVSQLDLGQLEGVAWVNKS ::: ::::::::.:::. ::::::::.... gi|750 MGTQKPRILPWLISQLNQGQLEGVAWLDEG 10 20 30 70 80 90 100 110 120 bm0075 RTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGL .:::::::::::::::::::::::::::::.:::.::.::::::::::::::::::::.: gi|750 HTRFRIPWKHGLRQDAQQEDFGIFQAWAEASGAYTPGKDKPDLPTWKRNFRSALNRKEAL 40 50 60 70 80 90 130 140 150 160 170 180 bm0075 RLAEDRSKDPHDPHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLA :::::.::::::::::::::.:::::: .:::: : .: :::::.:: ::.::..: :: gi|750 RLAEDHSKDPHDPHKIYEFVTSGVGDFPEPDTSLDLSGRYSTSDTHEDSLDKLLSGMDLA 100 110 120 130 140 150 190 200 210 220 230 240 bm0075 PLPDPGPPSLAVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFY : :: ::..: : :: :::.: :. :::: :::::.::. .::::.::.:: gi|750 S--DAGPQSLTLALEQPPQLSLSPSVDAPASCPNLGVRENPLKQLLANDDEWEFQVTVFY 160 170 180 190 200 250 260 270 280 290 300 bm0075 RGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGG :: ::::::. : ::::::::. : :: : :: ::::. ::::::: .:::.::::::: gi|750 RGCQVFQQTVCSPGGLRLVGSEAEDGTLAGQPVRLPDPAASLTDRGVADYVRRVLSCLGG 210 220 230 240 250 260 310 320 330 340 350 360 bm0075 GLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLI ::::::::::::::::::::.:::..:::.:.::: ::::::::.::::::::::: ::: gi|750 GLALWRAGQWLWAQRLGHCHVYWAMGEELIPDSGHKPDGEVPKDREGGVFDLGPFIEDLI 270 280 290 300 310 320 370 380 390 400 410 420 bm0075 TFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLENT .: ::: :::::.::::.:.:::::.::.:::::::::: ::::::.::: ::::::::: gi|750 AFIEGSRRSPRYTLWFCMGQSWPQDEPWVKRLVMVKVVPMCLRALVDMARDGGASSLENT 330 340 350 360 370 380 430 440 450 460 bm0075 VDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGES :::::::::::::::::::: :.:::: ::: gi|750 VDLHISNSHPLSLTSDQYKACLRDLVEDMDF 390 400 410 >>gi|194215786|ref|XP_001917797.1| PREDICTED: similar to (423 aa) initn: 2294 init1: 881 opt: 2251 Z-score: 2384.0 bits: 450.3 E(): 3.8e-124 Smith-Waterman score: 2251; 76.359% identity (88.889% similar) in 423 aa overlap (39-458:1-422) 10 20 30 40 50 60 bm0075 KEVWVRKLQARWVRGRPVAPRKCPIRAGRTMGTPKPRILPWLVSQLDLGQLEGVAWVNKS ::: :: :::::::::: :.::::::..:. gi|194 MGTHKPLILPWLVSQLDQGRLEGVAWLDKG 10 20 30 70 80 90 100 110 120 bm0075 RTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGL ::::::::::::::::::.:::::::::::.:::.::::::::::::::::::::::: : gi|194 RTRFRIPWKHGLRQDAQQKDFGIFQAWAEASGAYTPGRDKPDLPTWKRNFRSALNRKEVL 40 50 60 70 80 90 130 140 150 160 170 180 bm0075 RLAEDRSKDPHDPHKIYEFVNSGV---GDFSQPDTSPDTNGGGSTSDTQEDILDELLGNM ::..::::::.::::.:::.. :: ::..::::::::.: :: :: . ..:::..: gi|194 RLVDDRSKDPQDPHKVYEFLTPGVLEAGDLAQPDTSPDTGGRWSTCDTPKATVEELLSDM 100 110 120 130 140 150 190 200 210 220 230 240 bm0075 VLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFEVT .: :. : :: :::.::: :: : ::.:: : : ::. :.::::..:::: . :::::: gi|194 TLDPFLDGGPLSLALAPEHPPQLLLSPNLDIPGPCPNVEPAENPLRQLLVPEDAWEFEVT 160 170 180 190 200 210 250 260 270 280 290 300 bm0075 AFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSC ::::::::::::. :::::::: :..: :::: :. :::::. ::: ::: :..::: gi|194 AFYRGRQVFQQTVFCPEGLRLVEPEAADGTLPGQPIRLPDPGVYLTDGDVMSLVKRVLSN 220 230 240 250 260 270 310 320 330 340 350 360 bm0075 LGGGLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIV :::::::::::: :::::::: :.:::..:::::.: :::.:::::::::::::::::.. gi|194 LGGGLALWRAGQQLWAQRLGHSHVYWAMGEELLPDS-HGPSGEVPKDKEGGVFDLGPFVA 280 290 300 310 320 370 380 390 400 410 420 bm0075 DLITFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSL :::.: :: :::.:.::::.::::::::::::::::::::::::.::.::::. ::::. gi|194 DLIAFLGGSRRSPHYTLWFCLGESWPQDQPWTKRLVMVKVVPTCLKALLEMARIQGASSM 330 340 350 360 370 380 430 440 450 460 bm0075 ENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGES :::::::::::::::::::::::::.:::: :: gi|194 ENTVDLHISNSHPLSLTSDQYKAYLEDLVEDMDI 390 400 410 420 465 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 07:23:36 2008 done: Thu Aug 7 07:25:57 2008 Total Scan time: 866.340 Total Display time: 0.120 Function used was FASTA [version 34.26.5 April 26, 2007]