hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-07255886/chunk_1/iprscan-20080807-07255886.nocrc
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Query sequence: bm00752
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00605.8.fs Interferon regulatory factor transcription f    78.7    1.4e-22   1
PF00605.8.ls Interferon regulatory factor transcription f    79.6      9e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00605.8.fs   1/1      45   150 ..     1   111 []    78.7  1.4e-22
PF00605.8.ls   1/1      45   150 ..     1   111 []    79.6    9e-21

Alignments of top-scoring domains:
PF00605.8.fs: domain 1 of 1, from 45 to 150: score 78.7, E = 1.4e-22
                   *->RmRlRpWLveQInSnqiPGLiWenkeksiFrIPWkHAgKqdwdeekD
                        R+ pWLv Q + +q  G+ W nk ++ FrIPWkH  +qd  +e D
     bm00752    45    --RILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQE-D 88   

                   AalFkaWAIfkGKyKeGvDkaPdPatWKtrlRCAlNksPDfeEVkDrSrl
                     +F aWA  +G y +G Dk+ d  tWK ++R AlN    +    DrS +
     bm00752    89 FGIFQAWAEATGAYVPGRDKP-DLPTWKRNFRSALNRKEGLRLAEDRS-K 136  

                   dvsepykVYrlLPp<-*
                   d  +p k+Y  +     
     bm00752   137 DPHDPHKIYEFVNS    150  

PF00605.8.ls: domain 1 of 1, from 45 to 150: score 79.6, E = 9e-21
                   *->RmRlRpWLveQInSnqiPGLiWenkeksiFrIPWkHAgKqdwdeekD
                        R+ pWLv Q + +q  G+ W nk ++ FrIPWkH  +qd  +e D
     bm00752    45    --RILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQE-D 88   

                   AalFkaWAIfkGKyKeGvDkaPdPatWKtrlRCAlNksPDfeEVkDrSrl
                     +F aWA  +G y +G Dk+ d  tWK ++R AlN    +    DrS +
     bm00752    89 FGIFQAWAEATGAYVPGRDKP-DLPTWKRNFRSALNRKEGLRLAEDRS-K 136  

                   dvsepykVYrlLPp<-*
                   d  +p k+Y  +     
     bm00752   137 DPHDPHKIYEFVNS    150  

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