# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm00771.fasta.nr -Q bm00771.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm00771, 168 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6821050 sequences Expectation_n fit: rho(ln(x))= 4.8591+/-0.000187; mu= 9.1989+/- 0.011 mean_var=75.3191+/-14.219, 0's: 34 Z-trim: 59 B-trim: 2 in 1/65 Lambda= 0.147782 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|114636872|ref|XP_001145456.1| PREDICTED: hypoth ( 226) 1230 270.7 8.4e-71 gi|119588588|gb|EAW68182.1| LIM domain only 2 (rho ( 227) 1230 270.7 8.4e-71 gi|114636870|ref|XP_001145763.1| PREDICTED: hypoth ( 253) 1230 270.8 9.1e-71 gi|123229950|emb|CAM18988.1| LIM domain only 2 [Mu ( 220) 1225 269.6 1.7e-70 gi|123229948|emb|CAM18986.1| LIM domain only 2 [Mu ( 228) 1225 269.6 1.8e-70 gi|109106823|ref|XP_001115748.1| PREDICTED: LIM do ( 222) 1220 268.6 3.6e-70 gi|132533|sp|P25791|RBTN2_HUMAN Rhombotin-2 (LIM d ( 158) 1142 251.8 2.9e-65 gi|119361443|sp|Q1LZ94|RBTN2_BOVIN Rhombotin-2 (LI ( 158) 1139 251.2 4.5e-65 gi|132534|sp|P25801|RBTN2_MOUSE Rhombotin-2 (LIM d ( 158) 1137 250.7 6e-65 gi|149249519|ref|XP_001479934.1| PREDICTED: simila ( 285) 1133 250.1 1.7e-64 gi|148695762|gb|EDL27709.1| LIM domain only 2 [Mus ( 155) 1120 247.1 7.3e-64 gi|82195676|sp|Q5M8V8.1|RBTN2_XENTR Rhombotin-2 (L ( 158) 1108 244.6 4.4e-63 gi|82245456|sp|Q90XH3.1|RBTN2_XENLA Rhombotin-2 (L ( 158) 1099 242.6 1.7e-62 gi|9799068|gb|AAF98804.1| LMO2b splice variant [Ho ( 151) 1062 234.7 3.8e-60 gi|149409607|ref|XP_001507645.1| PREDICTED: simila ( 253) 1064 235.4 4.1e-60 gi|82223263|sp|Q9PTJ3.1|RBTN2_DANRE Rhombotin-2 (L ( 159) 1061 234.5 4.6e-60 gi|73982317|ref|XP_851277.1| PREDICTED: similar to ( 151) 1057 233.7 7.9e-60 gi|62202595|gb|AAH93136.1| Lmo2 protein [Danio rer ( 159) 1056 233.5 9.5e-60 gi|123229947|emb|CAM18985.1| LIM domain only 2 [Mu ( 144) 1044 230.9 5.2e-59 gi|47224482|emb|CAG08732.1| unnamed protein produc ( 153) 1001 221.7 3.1e-56 gi|37779048|gb|AAP20184.1| LIM domain only-2 [Pagr ( 127) 829 185.0 3e-45 gi|126332562|ref|XP_001380687.1| PREDICTED: simila ( 182) 675 152.3 3e-35 gi|119361442|sp|Q0P5B3|RBTN1_BOVIN Rhombotin-1 (LI ( 156) 583 132.6 2.1e-29 gi|126339961|ref|XP_001366731.1| PREDICTED: hypoth ( 252) 585 133.2 2.3e-29 gi|82213250|sp|Q8JFQ2.1|RBTN1_DANRE Rhombotin-1 (L ( 155) 579 131.8 3.9e-29 gi|24659990|gb|AAH39512.1| LIM domain only 1 (rhom ( 217) 580 132.1 4.2e-29 gi|120974283|gb|ABM46668.1| LMO1 [Gorilla gorilla] ( 147) 578 131.5 4.3e-29 gi|123899828|sp|Q3B8H4.1|RBTN1_XENLA Rhombotin-1 ( ( 156) 578 131.5 4.5e-29 gi|132532|sp|P25800|RBTN1_HUMAN Rhombotin-1 (LIM d ( 156) 578 131.5 4.5e-29 gi|114636612|ref|XP_001165367.1| PREDICTED: simila ( 322) 580 132.3 5.6e-29 gi|126332439|ref|XP_001379124.1| PREDICTED: simila ( 214) 578 131.7 5.6e-29 gi|149068371|gb|EDM17923.1| rCG40540, isoform CRA_ ( 145) 576 131.1 5.7e-29 gi|149068369|gb|EDM17921.1| rCG40540, isoform CRA_ ( 155) 576 131.1 6e-29 gi|149068370|gb|EDM17922.1| rCG40540, isoform CRA_ ( 156) 576 131.1 6e-29 gi|87248525|gb|ABD36315.1| beadex/dLMO protein [Bo ( 267) 578 131.8 6.6e-29 gi|148684981|gb|EDL16928.1| LIM domain only 1, iso ( 145) 573 130.5 8.9e-29 gi|148684980|gb|EDL16927.1| LIM domain only 1, iso ( 155) 573 130.5 9.4e-29 gi|118091250|ref|XP_420991.2| PREDICTED: hypotheti ( 534) 579 132.3 9.4e-29 gi|50401115|sp|Q924W9|RBTN1_MOUSE Rhombotin-1 (LIM ( 156) 573 130.5 9.4e-29 gi|109107392|ref|XP_001105198.1| PREDICTED: LIM do ( 480) 578 132.0 1e-28 gi|160858218|dbj|BAF93842.1| LIM domain only 1 [Su ( 156) 569 129.6 1.7e-28 gi|156228008|gb|EDO48809.1| predicted protein [Nem ( 155) 568 129.4 2e-28 gi|62148930|dbj|BAD93349.1| hypothetical protein [ ( 156) 567 129.2 2.3e-28 gi|109095831|ref|XP_001094610.1| PREDICTED: simila ( 187) 567 129.3 2.6e-28 gi|75070808|sp|Q5RBW7.1|LMO3_PONAB LIM domain only ( 145) 565 128.7 2.9e-28 gi|114643736|ref|XP_520773.2| PREDICTED: hypotheti ( 247) 567 129.4 3.2e-28 gi|34098349|sp|Q99MB5.2|LMO3_RAT LIM domain only p ( 145) 564 128.5 3.4e-28 gi|118083027|ref|XP_416410.2| PREDICTED: hypotheti ( 276) 567 129.4 3.4e-28 gi|13569715|gb|AAK31207.1|AF353304_1 neuronal spec ( 155) 564 128.6 3.5e-28 gi|82225303|sp|Q9YH16.1|LMO3_XENLA LIM domain only ( 156) 561 127.9 5.5e-28 >>gi|114636872|ref|XP_001145456.1| PREDICTED: hypothetic (226 aa) initn: 1230 init1: 1230 opt: 1230 Z-score: 1426.3 bits: 270.7 E(): 8.4e-71 Smith-Waterman score: 1230; 100.000% identity (100.000% similar) in 168 aa overlap (1-168:59-226) 10 20 30 bm0077 PPPGTPPPSPMSSAIERKSLDPSEEPVDEV :::::::::::::::::::::::::::::: gi|114 DGDGGGGGARAPEGVRAPAAGQPRATKGAPPPPGTPPPSPMSSAIERKSLDPSEEPVDEV 30 40 50 60 70 80 40 50 60 70 80 90 bm0077 LQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLC 90 100 110 120 130 140 100 110 120 130 140 150 bm0077 RRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINS 150 160 170 180 190 200 160 bm0077 DIVCEQDIYEWTKINGMI :::::::::::::::::: gi|114 DIVCEQDIYEWTKINGMI 210 220 >>gi|119588588|gb|EAW68182.1| LIM domain only 2 (rhombot (227 aa) initn: 1230 init1: 1230 opt: 1230 Z-score: 1426.3 bits: 270.7 E(): 8.4e-71 Smith-Waterman score: 1230; 100.000% identity (100.000% similar) in 168 aa overlap (1-168:60-227) 10 20 30 bm0077 PPPGTPPPSPMSSAIERKSLDPSEEPVDEV :::::::::::::::::::::::::::::: gi|119 GDGGGGGGARAPEGVRAPAAGQPRATKGAPPPPGTPPPSPMSSAIERKSLDPSEEPVDEV 30 40 50 60 70 80 40 50 60 70 80 90 bm0077 LQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLC 90 100 110 120 130 140 100 110 120 130 140 150 bm0077 RRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINS 150 160 170 180 190 200 160 bm0077 DIVCEQDIYEWTKINGMI :::::::::::::::::: gi|119 DIVCEQDIYEWTKINGMI 210 220 >>gi|114636870|ref|XP_001145763.1| PREDICTED: hypothetic (253 aa) initn: 1230 init1: 1230 opt: 1230 Z-score: 1425.7 bits: 270.8 E(): 9.1e-71 Smith-Waterman score: 1230; 100.000% identity (100.000% similar) in 168 aa overlap (1-168:86-253) 10 20 30 bm0077 PPPGTPPPSPMSSAIERKSLDPSEEPVDEV :::::::::::::::::::::::::::::: gi|114 DGDGGGGGARAPEGVRAPAAGQPRATKGAPPPPGTPPPSPMSSAIERKSLDPSEEPVDEV 60 70 80 90 100 110 40 50 60 70 80 90 bm0077 LQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLC 120 130 140 150 160 170 100 110 120 130 140 150 bm0077 RRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINS 180 190 200 210 220 230 160 bm0077 DIVCEQDIYEWTKINGMI :::::::::::::::::: gi|114 DIVCEQDIYEWTKINGMI 240 250 >>gi|123229950|emb|CAM18988.1| LIM domain only 2 [Mus mu (220 aa) initn: 1279 init1: 1225 opt: 1225 Z-score: 1420.7 bits: 269.6 E(): 1.7e-70 Smith-Waterman score: 1225; 99.405% identity (100.000% similar) in 168 aa overlap (1-168:53-220) 10 20 30 bm0077 PPPGTPPPSPMSSAIERKSLDPSEEPVDEV :::::::::::::::::::::::::::::: gi|123 KRRRRSGGARAPEGVRVQAASQPRATKGAPPPPGTPPPSPMSSAIERKSLDPSEEPVDEV 30 40 50 60 70 80 40 50 60 70 80 90 bm0077 LQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 LQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLC 90 100 110 120 130 140 100 110 120 130 140 150 bm0077 RRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 RRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINS 150 160 170 180 190 200 160 bm0077 DIVCEQDIYEWTKINGMI ::::::::::::::::.: gi|123 DIVCEQDIYEWTKINGII 210 220 >>gi|123229948|emb|CAM18986.1| LIM domain only 2 [Mus mu (228 aa) initn: 1279 init1: 1225 opt: 1225 Z-score: 1420.5 bits: 269.6 E(): 1.8e-70 Smith-Waterman score: 1225; 99.405% identity (100.000% similar) in 168 aa overlap (1-168:61-228) 10 20 30 bm0077 PPPGTPPPSPMSSAIERKSLDPSEEPVDEV :::::::::::::::::::::::::::::: gi|123 KRRRRSGGARAPEGVRVQAASQPRATKGAPPPPGTPPPSPMSSAIERKSLDPSEEPVDEV 40 50 60 70 80 90 40 50 60 70 80 90 bm0077 LQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 LQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLC 100 110 120 130 140 150 100 110 120 130 140 150 bm0077 RRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 RRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINS 160 170 180 190 200 210 160 bm0077 DIVCEQDIYEWTKINGMI ::::::::::::::::.: gi|123 DIVCEQDIYEWTKINGII 220 >>gi|109106823|ref|XP_001115748.1| PREDICTED: LIM domain (222 aa) initn: 1220 init1: 1220 opt: 1220 Z-score: 1414.9 bits: 268.6 E(): 3.6e-70 Smith-Waterman score: 1220; 100.000% identity (100.000% similar) in 167 aa overlap (2-168:56-222) 10 20 30 bm0077 PPPGTPPPSPMSSAIERKSLDPSEEPVDEVL :::::::::::::::::::::::::::::: gi|109 RRSGGGGARAPEGVRAPAAGQPRATKGAPLPPGTPPPSPMSSAIERKSLDPSEEPVDEVL 30 40 50 60 70 80 40 50 60 70 80 90 bm0077 QIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCR 90 100 110 120 130 140 100 110 120 130 140 150 bm0077 RDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSD 150 160 170 180 190 200 160 bm0077 IVCEQDIYEWTKINGMI ::::::::::::::::: gi|109 IVCEQDIYEWTKINGMI 210 220 >>gi|132533|sp|P25791|RBTN2_HUMAN Rhombotin-2 (LIM domai (158 aa) initn: 1142 init1: 1142 opt: 1142 Z-score: 1326.9 bits: 251.8 E(): 2.9e-65 Smith-Waterman score: 1142; 100.000% identity (100.000% similar) in 158 aa overlap (11-168:1-158) 10 20 30 40 50 60 bm0077 PPPGTPPPSPMSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYW :::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYW 10 20 30 40 50 70 80 90 100 110 120 bm0077 HEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 HEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRV 60 70 80 90 100 110 130 140 150 160 bm0077 KDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI :::::::::::::::::::::::::::::::::::::::::::::::: gi|132 KDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI 120 130 140 150 >>gi|119361443|sp|Q1LZ94|RBTN2_BOVIN Rhombotin-2 (LIM do (158 aa) initn: 1139 init1: 1139 opt: 1139 Z-score: 1323.5 bits: 251.2 E(): 4.5e-65 Smith-Waterman score: 1139; 99.367% identity (100.000% similar) in 158 aa overlap (11-168:1-158) 10 20 30 40 50 60 bm0077 PPPGTPPPSPMSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYW ::::::::::::::::::::::.::::::::::::::::::::::::::: gi|119 MSSAIERKSLDPSEEPVDEVLQMPPSLLTCGGCQQNIGDRYFLKAIDQYW 10 20 30 40 50 70 80 90 100 110 120 bm0077 HEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRV 60 70 80 90 100 110 130 140 150 160 bm0077 KDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI :::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI 120 130 140 150 >>gi|132534|sp|P25801|RBTN2_MOUSE Rhombotin-2 (LIM domai (158 aa) initn: 1160 init1: 1137 opt: 1137 Z-score: 1321.2 bits: 250.7 E(): 6e-65 Smith-Waterman score: 1137; 99.367% identity (100.000% similar) in 158 aa overlap (11-168:1-158) 10 20 30 40 50 60 bm0077 PPPGTPPPSPMSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYW :::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYW 10 20 30 40 50 70 80 90 100 110 120 bm0077 HEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 HEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRV 60 70 80 90 100 110 130 140 150 160 bm0077 KDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI ::::::::::::::::::::::::::::::::::::::::::::::.: gi|132 KDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGII 120 130 140 150 >>gi|149249519|ref|XP_001479934.1| PREDICTED: similar to (285 aa) initn: 1148 init1: 1125 opt: 1133 Z-score: 1313.3 bits: 250.1 E(): 1.7e-64 Smith-Waterman score: 1133; 95.732% identity (96.951% similar) in 164 aa overlap (5-168:122-285) 10 20 30 bm0077 PPPGTPPPSPMSSAIERKSLDPSEEPVDEVLQIP : : .:::::::::::::::::::::: gi|149 DGRDVHLAVQAGDPSELCSLGACWQSSVSYTAEQRPPGSAIERKSLDPSEEPVDEVLQIP 100 110 120 130 140 150 40 50 60 70 80 90 bm0077 PSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDY 160 170 180 190 200 210 100 110 120 130 140 150 bm0077 LRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVC 220 230 240 250 260 270 160 bm0077 EQDIYEWTKINGMI ::::::::::::.: gi|149 EQDIYEWTKINGII 280 168 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 07:28:59 2008 done: Thu Aug 7 07:31:53 2008 Total Scan time: 589.940 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]