hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-07315401/chunk_1/iprscan-20080807-07315401.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm00771
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00412.12.ls LIM domain                                     142.0    1.5e-39   2
PF00412.12.fs LIM domain                                     138.0    2.7e-39   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00412.12.fs   1/2      40    99 ..     1    61 []    53.8    6e-15
PF00412.12.ls   1/2      40    99 ..     1    61 []    55.8  1.3e-13
PF00412.12.fs   2/2     104   163 ..     1    61 []    84.2  9.9e-24
PF00412.12.ls   2/2     104   163 ..     1    61 []    86.2  9.4e-23

Alignments of top-scoring domains:
PF00412.12.fs: domain 1 of 2, from 40 to 99: score 53.8, E = 6e-15
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegde.ffekd
                      C+gC++ I dr+ + +A d +wH++C+ C  Cg+ Lge +++ + k 
     bm00771    40    CGGCQQNIGDRYFL-KAIDQYWHEDCLSCDLCGCRLGEVGRrLYYKL 85   

                   gsklYCkhDyyklfg<-*
                   g + +C++Dy++lfg   
     bm00771    86 G-RKLCRRDYLRLFG    99   

PF00412.12.ls: domain 1 of 2, from 40 to 99: score 55.8, E = 1.3e-13
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegde.ffekd
                      C+gC++ I dr+ + +A d +wH++C+ C  Cg+ Lge +++ + k 
     bm00771    40    CGGCQQNIGDRYFL-KAIDQYWHEDCLSCDLCGCRLGEVGRrLYYKL 85   

                   gsklYCkhDyyklfg<-*
                   g + +C++Dy++lfg   
     bm00771    86 G-RKLCRRDYLRLFG    99   

PF00412.12.fs: domain 2 of 2, from 104 to 163: score 84.2, E = 9.9e-24
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      Ca+C+k+I++ e+++r++dkv+H+eCF+Ca C+k+++ gd++ +++ 
     bm00771   104    CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINS 150  

                   sklYCkhDyyklfg<-*
                     ++C++D y + +   
     bm00771   151 -DIVCEQDIYEWTK    163  

PF00412.12.ls: domain 2 of 2, from 104 to 163: score 86.2, E = 9.4e-23
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      Ca+C+k+I++ e+++r++dkv+H+eCF+Ca C+k+++ gd++ +++ 
     bm00771   104    CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINS 150  

                   sklYCkhDyyklfg<-*
                     ++C++D y + +   
     bm00771   151 -DIVCEQDIYEWTK    163  

//