# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm00851.fasta.nr -Q bm00851.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm00851, 472 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6796145 sequences Expectation_n fit: rho(ln(x))= 5.9787+/-0.000211; mu= 8.4226+/- 0.012 mean_var=137.2935+/-25.875, 0's: 54 Z-trim: 168 B-trim: 433 in 1/66 Lambda= 0.109458 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|114678225|ref|XP_001156213.1| PREDICTED: hypoth ( 534) 3309 534.1 2.9e-149 gi|36100|emb|CAA28352.1| unnamed protein product [ ( 614) 3112 503.0 7.5e-140 gi|109125535|ref|XP_001112732.1| PREDICTED: simila ( 579) 3089 499.4 8.9e-139 gi|13635663|sp|P08621|RU17_HUMAN U1 small nuclear ( 437) 3063 495.1 1.3e-137 gi|158259701|dbj|BAF85809.1| unnamed protein produ ( 437) 3045 492.3 9.1e-137 gi|73948009|ref|XP_541503.2| PREDICTED: similar to ( 439) 2989 483.4 4.2e-134 gi|117940094|sp|Q1RMR2|RU17_BOVIN U1 small nuclear ( 439) 2988 483.3 4.7e-134 gi|194215756|ref|XP_001917325.1| PREDICTED: simila ( 469) 2796 453.0 6.6e-125 gi|83305641|sp|Q62376|RU17_MOUSE U1 small nuclear ( 448) 2356 383.5 5.3e-104 gi|149055933|gb|EDM07364.1| U1 small nuclear ribon ( 451) 2325 378.6 1.6e-102 gi|602021|emb|CAA29961.1| unnamed protein product ( 301) 2091 341.4 1.6e-91 gi|134091|sp|P09406|RU17_XENLA U1 small nuclear ri ( 471) 2081 340.1 6.4e-91 gi|80479195|gb|AAI08448.1| LOC397946 protein [Xeno ( 471) 2076 339.3 1.1e-90 gi|82234425|sp|Q66II8|RU17_XENTR U1 small nuclear ( 471) 2027 331.5 2.4e-88 gi|337445|gb|AAA36573.1| ribonucleoprotein antigen ( 428) 2019 330.2 5.3e-88 gi|825727|emb|CAA30303.1| hU1-70K protein (286 AA) ( 285) 1951 319.3 7e-85 gi|5912017|emb|CAB55969.1| hypothetical protein [H ( 341) 1947 318.8 1.2e-84 gi|193786989|dbj|BAG51812.1| unnamed protein produ ( 341) 1937 317.2 3.6e-84 gi|119572837|gb|EAW52452.1| small nuclear ribonucl ( 395) 1905 312.2 1.3e-82 gi|66910786|gb|AAH97714.1| LOC397946 protein [Xeno ( 351) 1889 309.6 7.1e-82 gi|763157|emb|CAA33777.1| U1RNA-associated 70-kDa ( 378) 1837 301.4 2.2e-79 gi|49619089|gb|AAT68129.1| U1 small ribonucleoprot ( 495) 1759 289.3 1.3e-75 gi|74140671|dbj|BAB29263.3| unnamed protein produc ( 248) 1745 286.7 4e-75 gi|51703882|gb|AAH81025.1| Unknown (protein for IM ( 267) 1671 275.0 1.4e-71 gi|50417136|gb|AAH77089.1| Snrp70 protein [Danio r ( 306) 1653 272.3 1.1e-70 gi|602023|emb|CAA29963.1| unnamed protein product ( 233) 1644 270.7 2.4e-70 gi|149462268|ref|XP_001517310.1| PREDICTED: simila ( 232) 1543 254.8 1.5e-65 gi|91078908|ref|XP_967303.1| PREDICTED: similar to ( 408) 1390 230.9 4.1e-58 gi|156547263|ref|XP_001602052.1| PREDICTED: simila ( 402) 1375 228.5 2.1e-57 gi|115926217|ref|XP_001193416.1| PREDICTED: simila ( 500) 1370 227.8 4.2e-57 gi|157020685|gb|EAL41962.3| AGAP006755-PA [Anophel ( 434) 1361 226.3 1e-56 gi|110760725|ref|XP_623789.2| PREDICTED: similar t ( 450) 1335 222.2 1.8e-55 gi|90076320|dbj|BAE87840.1| unnamed protein produc ( 344) 1329 221.2 2.9e-55 gi|193662169|ref|XP_001952270.1| PREDICTED: simila ( 414) 1304 217.3 5.1e-54 gi|190616089|gb|EDV31613.1| GF14460 [Drosophila an ( 453) 1232 206.0 1.4e-50 gi|193913679|gb|EDW12546.1| GI24161 [Drosophila mo ( 452) 1228 205.4 2.2e-50 gi|108742141|gb|AAI17603.1| Snrp70 protein [Danio ( 339) 1224 204.6 2.8e-50 gi|54644102|gb|EAL32844.1| GA21298-PA [Drosophila ( 457) 1224 204.7 3.5e-50 gi|194148927|gb|EDW64625.1| GJ21434 [Drosophila vi ( 454) 1221 204.2 4.8e-50 gi|194129900|gb|EDW51943.1| GM13669 [Drosophila se ( 448) 1219 203.9 5.9e-50 gi|194174194|gb|EDW87805.1| GE18384 [Drosophila ya ( 448) 1214 203.1 1e-49 gi|158315|gb|AAA28859.1| U1 70K small nuclear ribo ( 448) 1214 203.1 1e-49 gi|13638469|sp|P17133|RU17_DROME U1 small nuclear ( 448) 1213 203.0 1.1e-49 gi|190661972|gb|EDV59164.1| GG23559 [Drosophila er ( 448) 1212 202.8 1.3e-49 gi|193900040|gb|EDV98906.1| GH13577 [Drosophila gr ( 465) 1211 202.7 1.5e-49 gi|194162515|gb|EDW77416.1| GK18098 [Drosophila wi ( 470) 1211 202.7 1.5e-49 gi|149055936|gb|EDM07367.1| U1 small nuclear ribon ( 352) 1209 202.2 1.5e-49 gi|194190465|gb|EDX04041.1| GD22521 [Drosophila si ( 348) 1206 201.7 2.1e-49 gi|193657247|ref|XP_001947021.1| PREDICTED: simila ( 397) 1194 199.9 8.4e-49 gi|156215911|gb|EDO36859.1| predicted protein [Nem ( 245) 1170 195.9 8.5e-48 >>gi|114678225|ref|XP_001156213.1| PREDICTED: hypothetic (534 aa) initn: 3309 init1: 3309 opt: 3309 Z-score: 2834.8 bits: 534.1 E(): 2.9e-149 Smith-Waterman score: 3309; 100.000% identity (100.000% similar) in 472 aa overlap (1-472:63-534) 10 20 30 bm0085 EWKPKQELLLLRGCRSRREPPDRRQSEEGA :::::::::::::::::::::::::::::: gi|114 RGGLGQARARTAAWCARLAGDGIRRTWTPPEWKPKQELLLLRGCRSRREPPDRRQSEEGA 40 50 60 70 80 90 40 50 60 70 80 90 bm0085 TRLGKMTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TRLGKMTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAP 100 110 120 130 140 150 100 110 120 130 140 150 bm0085 PPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTT 160 170 180 190 200 210 160 170 180 190 200 210 bm0085 ESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 220 230 240 250 260 270 220 230 240 250 260 270 bm0085 VDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDR 280 290 300 310 320 330 280 290 300 310 320 330 bm0085 DRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRS 340 350 360 370 380 390 340 350 360 370 380 390 bm0085 RERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERR 400 410 420 430 440 450 400 410 420 430 440 450 bm0085 RSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYM 460 470 480 490 500 510 460 470 bm0085 ESEGGDGYLAPENGYLMEAAPE :::::::::::::::::::::: gi|114 ESEGGDGYLAPENGYLMEAAPE 520 530 >>gi|36100|emb|CAA28352.1| unnamed protein product [Homo (614 aa) initn: 3107 init1: 3107 opt: 3112 Z-score: 2666.0 bits: 503.0 E(): 7.5e-140 Smith-Waterman score: 3112; 98.031% identity (98.468% similar) in 457 aa overlap (19-472:158-614) 10 20 30 40 bm0085 EWKPKQELLLLRGCRSRREPPDRR-QSEE--GATRLGKMTQFLPPNLL .:: :. : ::::::::::::::::: gi|361 RSSSGRRNQTDVDAPGVEAEAGVVVAEGLPQPPRASGQTPERGGATRLGKMTQFLPPNLL 130 140 150 160 170 180 50 60 70 80 90 100 bm0085 ALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|361 ALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERK 190 200 210 220 230 240 110 120 130 140 150 160 bm0085 RREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|361 RREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIK 250 260 270 280 290 300 170 180 190 200 210 220 bm0085 RIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|361 RIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPR 310 320 330 340 350 360 230 240 250 260 270 280 bm0085 RLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|361 RLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDK 370 380 390 400 410 420 290 300 310 320 330 340 bm0085 ERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|361 ERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELR 430 440 450 460 470 480 350 360 370 380 390 400 bm0085 GGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|361 GGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDR 490 500 510 520 530 540 410 420 430 440 450 460 bm0085 DRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENGY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|361 DRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENGY 550 560 570 580 590 600 470 bm0085 LMEAAPE ::::::: gi|361 LMEAAPE 610 >>gi|109125535|ref|XP_001112732.1| PREDICTED: similar to (579 aa) initn: 3089 init1: 3089 opt: 3089 Z-score: 2646.6 bits: 499.4 E(): 8.9e-139 Smith-Waterman score: 3089; 99.549% identity (100.000% similar) in 443 aa overlap (30-472:137-579) 10 20 30 40 50 bm0085 EWKPKQELLLLRGCRSRREPPDRRQSEEGATRLGKMTQFLPPNLLALFAPRDPIPYLPP :..::::::::::::::::::::::::::: gi|109 EAQAGAVVAEGPPQPPRASGQTPELGGRCAASELGKMTQFLPPNLLALFAPRDPIPYLPP 110 120 130 140 150 160 60 70 80 90 100 110 bm0085 LEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVET 170 180 190 200 210 220 120 130 140 150 160 170 bm0085 ELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPR 230 240 250 260 270 280 180 190 200 210 220 230 bm0085 GYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGA 290 300 310 320 330 340 240 250 260 270 280 290 bm0085 DVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 DVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRR 350 360 370 380 390 400 300 310 320 330 340 350 bm0085 RSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGD 410 420 430 440 450 460 360 370 380 390 400 410 bm0085 APPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 APPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERG 470 480 490 500 510 520 420 430 440 450 460 470 bm0085 SERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENGYLMEAAPE ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 SERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENGYLMEAAPE 530 540 550 560 570 >>gi|13635663|sp|P08621|RU17_HUMAN U1 small nuclear ribo (437 aa) initn: 3063 init1: 3063 opt: 3063 Z-score: 2625.9 bits: 495.1 E(): 1.3e-137 Smith-Waterman score: 3063; 100.000% identity (100.000% similar) in 437 aa overlap (36-472:1-437) 10 20 30 40 50 60 bm0085 QELLLLRGCRSRREPPDRRQSEEGATRLGKMTQFLPPNLLALFAPRDPIPYLPPLEKLPH :::::::::::::::::::::::::::::: gi|136 MTQFLPPNLLALFAPRDPIPYLPPLEKLPH 10 20 30 70 80 90 100 110 120 bm0085 EKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 EKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWD 40 50 60 70 80 90 130 140 150 160 170 180 bm0085 PHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 PHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIE 100 110 120 130 140 150 190 200 210 220 230 240 bm0085 YEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 YEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRH 160 170 180 190 200 210 250 260 270 280 290 300 bm0085 SGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 SGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRD 220 230 240 250 260 270 310 320 330 340 350 360 bm0085 KEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 KEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDG 280 290 300 310 320 330 370 380 390 400 410 420 bm0085 PPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 PPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRD 340 350 360 370 380 390 430 440 450 460 470 bm0085 EARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENGYLMEAAPE ::::::::::::::::::::::::::::::::::::::::::::::: gi|136 EARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENGYLMEAAPE 400 410 420 430 >>gi|158259701|dbj|BAF85809.1| unnamed protein product [ (437 aa) initn: 3045 init1: 3045 opt: 3045 Z-score: 2610.5 bits: 492.3 E(): 9.1e-137 Smith-Waterman score: 3045; 99.313% identity (99.771% similar) in 437 aa overlap (36-472:1-437) 10 20 30 40 50 60 bm0085 QELLLLRGCRSRREPPDRRQSEEGATRLGKMTQFLPPNLLALFAPRDPIPYLPPLEKLPH :::::::::::::::::::::::::::::: gi|158 MTQFLPPNLLALFAPRDPIPYLPPLEKLPH 10 20 30 70 80 90 100 110 120 bm0085 EKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWD ::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: gi|158 EKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRRKKIERRQQEVETELKMWD 40 50 60 70 80 90 130 140 150 160 170 180 bm0085 PHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIE ::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: gi|158 PHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHTVYSKRSGKPRGYAFIE 100 110 120 130 140 150 190 200 210 220 230 240 bm0085 YEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 YEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRH 160 170 180 190 200 210 250 260 270 280 290 300 bm0085 SGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 SGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRD 220 230 240 250 260 270 310 320 330 340 350 360 bm0085 KEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 KEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDG 280 290 300 310 320 330 370 380 390 400 410 420 bm0085 PPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRD ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|158 PPGELGPDGPDGPEEKGRDRDRERRRGHRSERERRRDRDRDRDRDREHKRGERGSERGRD 340 350 360 370 380 390 430 440 450 460 470 bm0085 EARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENGYLMEAAPE ::::::::::::::::::::::::::::::::::::::::::::::: gi|158 EARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENGYLMEAAPE 400 410 420 430 >>gi|73948009|ref|XP_541503.2| PREDICTED: similar to U1 (439 aa) initn: 2545 init1: 2242 opt: 2989 Z-score: 2562.7 bits: 483.4 E(): 4.2e-134 Smith-Waterman score: 2989; 97.959% identity (98.639% similar) in 441 aa overlap (36-472:1-439) 10 20 30 40 50 60 bm0085 QELLLLRGCRSRREPPDRRQSEEGATRLGKMTQFLPPNLLALFAPRDPIPYLPPLEKLPH :::::::::::::::::::::::::::::: gi|739 MTQFLPPNLLALFAPRDPIPYLPPLEKLPH 10 20 30 70 80 90 100 110 120 bm0085 EKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 EKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWD 40 50 60 70 80 90 130 140 150 160 170 180 bm0085 PHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 PHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIE 100 110 120 130 140 150 190 200 210 220 230 240 bm0085 YEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 YEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRH 160 170 180 190 200 210 250 260 270 280 290 300 bm0085 SGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 SGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRD 220 230 240 250 260 270 310 320 330 340 350 360 bm0085 KEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGG---DMAEPSEAGDAPP ::::::::::::::::.::::::::::::::::::::::::::: ::::::::::::: gi|739 KEERRRSRERSKDKDRERKRRSSRSRERARRERERKEELRGGGGGGGDMAEPSEAGDAPP 280 290 300 310 320 330 370 380 390 400 410 420 bm0085 DDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSER :::::::::::::::::::::::::::::::::::::::::::::: :::::::::.:: gi|739 DDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRD--REHKRGERGGER 340 350 360 370 380 430 440 450 460 470 bm0085 GRDEARGGGGG-QDNGLEGLGNDSRDMYMESEGGDGYLAPENGYLMEAAPE ::::::::::: ::::::::::.:::::::::::::::::::::::::::: gi|739 GRDEARGGGGGGQDNGLEGLGNESRDMYMESEGGDGYLAPENGYLMEAAPE 390 400 410 420 430 >>gi|117940094|sp|Q1RMR2|RU17_BOVIN U1 small nuclear rib (439 aa) initn: 2437 init1: 2246 opt: 2988 Z-score: 2561.9 bits: 483.3 E(): 4.7e-134 Smith-Waterman score: 2988; 97.732% identity (98.639% similar) in 441 aa overlap (36-472:1-439) 10 20 30 40 50 60 bm0085 QELLLLRGCRSRREPPDRRQSEEGATRLGKMTQFLPPNLLALFAPRDPIPYLPPLEKLPH :::::::::::::::::::::::::::::: gi|117 MTQFLPPNLLALFAPRDPIPYLPPLEKLPH 10 20 30 70 80 90 100 110 120 bm0085 EKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 EKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWD 40 50 60 70 80 90 130 140 150 160 170 180 bm0085 PHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 PHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIE 100 110 120 130 140 150 190 200 210 220 230 240 bm0085 YEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 YEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRH 160 170 180 190 200 210 250 260 270 280 290 300 bm0085 SGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 SGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRD 220 230 240 250 260 270 310 320 330 340 350 360 bm0085 KEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGG---DMAEPSEAGDAPP :::::::::::::::::::::::::::::::::::::::::::: ::::::::::::: gi|117 KEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGGGGDMAEPSEAGDAPP 280 290 300 310 320 330 370 380 390 400 410 420 bm0085 DDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSER :::::::::::::::::::::::::.:::::::::::::::::::: :::::::::..: gi|117 DDGPPGELGPDGPDGPEEKGRDRDRDRRRSHRSERERRRDRDRDRD--REHKRGERGGDR 340 350 360 370 380 430 440 450 460 470 bm0085 GRDEARGGGGG-QDNGLEGLGNDSRDMYMESEGGDGYLAPENGYLMEAAPE ::::::::::: :::::::::::.::::::::::::::::::::::::::: gi|117 GRDEARGGGGGGQDNGLEGLGNDGRDMYMESEGGDGYLAPENGYLMEAAPE 390 400 410 420 430 >>gi|194215756|ref|XP_001917325.1| PREDICTED: similar to (469 aa) initn: 2063 init1: 2063 opt: 2796 Z-score: 2397.7 bits: 453.0 E(): 6.6e-125 Smith-Waterman score: 2796; 92.955% identity (96.136% similar) in 440 aa overlap (36-472:32-469) 10 20 30 40 50 60 bm0085 QELLLLRGCRSRREPPDRRQSEEGATRLGKMTQFLPPNLLALFAPRDPIPYLPPLEKLPH .:.::::..:::.:::::.: :: :: :. gi|194 AVTHLRSPRTPYSALALQSADCLTPHSTENITRFLPPTFLALLAPRDPLPSPPPREKPPK 10 20 30 40 50 60 70 80 90 100 110 120 bm0085 EKHHNQPYCGIAPYIREFE-DPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMW .:: :.: :.::: : : :::::::::::::::::::::::::::::::::::::::: gi|194 KKHTNHPTCAIAPPPRGFGGDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMW 70 80 90 100 110 120 130 140 150 160 170 180 bm0085 DPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 DPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFI 130 140 150 160 170 180 190 200 210 220 230 240 bm0085 EYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 EYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIR 190 200 210 220 230 240 250 260 270 280 290 300 bm0085 HSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 HSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSR 250 260 270 280 290 300 310 320 330 340 350 360 bm0085 DKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELR-GGGGDMAEPSEAGDAPPD ::.::::::::::::::.::::::::::::::::::::::: :::::::::::::::::: gi|194 DKDERRRSRERSKDKDRERKRRSSRSRERARRERERKEELRAGGGGDMAEPSEAGDAPPD 310 320 330 340 350 360 370 380 390 400 410 420 bm0085 DGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERG :: ::::::: :::::::::::::::::::::::::::::::::: :::::::::.::: gi|194 DGLPGELGPDVPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRD--REHKRGERGGERG 370 380 390 400 410 430 440 450 460 470 bm0085 RDEARGGGGG-QDNGLEGLGNDSRDMYMESEGGDGYLAPENGYLMEAAPE :::::::::: :::::::::::.::::::::::::::::::::::::::: gi|194 RDEARGGGGGGQDNGLEGLGNDGRDMYMESEGGDGYLAPENGYLMEAAPE 420 430 440 450 460 >>gi|83305641|sp|Q62376|RU17_MOUSE U1 small nuclear ribo (448 aa) initn: 2753 init1: 2213 opt: 2356 Z-score: 2022.4 bits: 383.5 E(): 5.3e-104 Smith-Waterman score: 2945; 94.889% identity (96.444% similar) in 450 aa overlap (36-472:1-448) 10 20 30 40 50 60 bm0085 QELLLLRGCRSRREPPDRRQSEEGATRLGKMTQFLPPNLLALFAPRDPIPYLPPLEKLPH :::::::::::::::::::::::::::::: gi|833 MTQFLPPNLLALFAPRDPIPYLPPLEKLPH 10 20 30 70 80 90 100 110 120 bm0085 EKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|833 EKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWD 40 50 60 70 80 90 130 140 150 160 170 180 bm0085 PHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|833 PHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIE 100 110 120 130 140 150 190 200 210 220 230 240 bm0085 YEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|833 YEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRH 160 170 180 190 200 210 250 260 270 280 290 300 bm0085 SGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|833 SGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRD 220 230 240 250 260 270 310 320 330 340 350 bm0085 KEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGG------------DMAE :.:::::::::::::::::::::::::::::::::::::::::: :::: gi|833 KDERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGGGGGGSGGGGGGDMAE 280 290 300 310 320 330 360 370 380 390 400 410 bm0085 PSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREH ::::::. :::::::::::.::::::::::::::::::::::::::::::::::: ::: gi|833 PSEAGDGAPDDGPPGELGPEGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRD--REH 340 350 360 370 380 420 430 440 450 460 470 bm0085 KRGERGSERGRDEARGGGG-GQDNGLEGLGNDSRDMYMESEGGDGYLAPENGYLMEAAPE ::::::::::::::::::: ::::::::::.:.::::::.::::::.::::::::::::: gi|833 KRGERGSERGRDEARGGGGSGQDNGLEGLGSDGRDMYMEAEGGDGYMAPENGYLMEAAPE 390 400 410 420 430 440 >>gi|149055933|gb|EDM07364.1| U1 small nuclear ribonucle (451 aa) initn: 2180 init1: 2180 opt: 2325 Z-score: 1995.9 bits: 378.6 E(): 1.6e-102 Smith-Waterman score: 2939; 94.260% identity (95.806% similar) in 453 aa overlap (36-472:1-451) 10 20 30 40 50 60 bm0085 QELLLLRGCRSRREPPDRRQSEEGATRLGKMTQFLPPNLLALFAPRDPIPYLPPLEKLPH :::::::::::::::::::::::::::::: gi|149 MTQFLPPNLLALFAPRDPIPYLPPLEKLPH 10 20 30 70 80 90 100 110 120 bm0085 EKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 EKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWD 40 50 60 70 80 90 130 140 150 160 170 180 bm0085 PHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIE 100 110 120 130 140 150 190 200 210 220 230 240 bm0085 YEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 YEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRH 160 170 180 190 200 210 250 260 270 280 290 300 bm0085 SGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 SGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRD 220 230 240 250 260 270 310 320 330 340 350 bm0085 KEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGG---------------D :.:::::::::::::::::::::::::::::::::::::::::: : gi|149 KDERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGGGGGGGGGGGGGGGGD 280 290 300 310 320 330 360 370 380 390 400 410 bm0085 MAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRD :::::::::. :::::::::::.::::::::::::::::::::::::::::::::::: gi|149 MAEPSEAGDGAPDDGPPGELGPEGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRD-- 340 350 360 370 380 420 430 440 450 460 bm0085 REHKRGERGSERGRDEARGGGG-GQDNGLEGLGNDSRDMYMESEGGDGYLAPENGYLMEA :::::::::::::::::::::: ::::::::::.:.::::::.::::::.:::::::::: gi|149 REHKRGERGSERGRDEARGGGGSGQDNGLEGLGSDGRDMYMEAEGGDGYMAPENGYLMEA 390 400 410 420 430 440 470 bm0085 APE ::: gi|149 APE 450 472 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 07:34:52 2008 done: Thu Aug 7 07:37:13 2008 Total Scan time: 854.220 Total Display time: 0.130 Function used was FASTA [version 34.26.5 April 26, 2007]