hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-07371488/chunk_1/iprscan-20080807-07371488.nocrc
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Query sequence: bm00851
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     86.6    1.6e-23   1
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     88.6    1.8e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/1     140   211 ..     1    74 []    86.6  1.6e-23
PF00076.12.ls   1/1     140   211 ..     1    74 []    88.6  1.8e-23

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 1, from 140 to 211: score 86.6, E = 1.6e-23
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfV   ++dtte++L++ F+ +Gpi++i +v+   +  g+++G+aF+
     bm00851   140    LFVARVNYDTTESKLRREFEVYGPIKRIHMVYS--KRSGKPRGYAFI 184  

                   eFedeedAekAldalnGkelggrelrv<-*
                   e+e e+d+ +A +  +Gk+++gr++ v   
     bm00851   185 EYEHERDMHSAYKHADGKKIDGRRVLV    211  

PF00076.12.ls: domain 1 of 1, from 140 to 211: score 88.6, E = 1.8e-23
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfV   ++dtte++L++ F+ +Gpi++i +v+   +  g+++G+aF+
     bm00851   140    LFVARVNYDTTESKLRREFEVYGPIKRIHMVYS--KRSGKPRGYAFI 184  

                   eFedeedAekAldalnGkelggrelrv<-*
                   e+e e+d+ +A +  +Gk+++gr++ v   
     bm00851   185 EYEHERDMHSAYKHADGKKIDGRRVLV    211  

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