hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-07371488/chunk_1/iprscan-20080807-07371488.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm00851 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00360 93.9 1.9e-23 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00360 1/1 139 212 .. 1 121 [] 93.9 1.9e-23 Alignments of top-scoring domains: SM00360: domain 1 of 1, from 139 to 212: score 93.9, E = 1.9e-23 *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri tlfV + ++d+te+ Lr+ F + +G+++++++ bm00851 139 TLFVARV--NYDTTESKLRREF--------------EVYGPIKRIHM 169 vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli v+ k +Gk++G+aF+e+e e+d+ A bm00851 170 VYSKR---------------------SGKPRGYAFIEYEHERDMHSA--Y 196 ealnaskGkeledgGrptlglrVe<-* ++ + Gk++ +Gr+ + V+ bm00851 197 KHAD---GKKI--DGRR---VLVD 212 //