hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-20292175/chunk_1/iprscan-20090617-20292175.nocrc
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Query sequence: bm00929
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00054                                                 115.4    6.5e-30   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00054    1/4      40    68 ..     1    29 []    26.7   0.0032
SM00054    2/4     127   155 ..     1    29 []    35.8  5.9e-06
SM00054    3/4     171   199 ..     1    29 []    13.0      3.9
SM00054    4/4     215   243 ..     1    29 []    39.8  3.5e-07

Alignments of top-scoring domains:
SM00054: domain 1 of 4, from 40 to 68: score 26.7, E = 0.0032
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                      ++ e++ +fD+Dg+G+++ +E++ l+++l   
     bm00929    40    QFFEIWLHFDADGSGYLEGKELQNLIQEL    68   

SM00054: domain 2 of 4, from 127 to 155: score 35.8, E = 5.9e-06
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                      e+++ +r++D+D++G+I+ eE+k +lk l   
     bm00929   127    EFMKTWRKYDTDHSGFIETEELKNFLKDL    155  

SM00054: domain 3 of 4, from 171 to 199: score 13.0, E = 3.9
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                        + + ++fD ++dGk+++ E+ +ll      
     bm00929   171    YTDLMLKLFDSNNDGKLELTEMARLLPVQ    199  

SM00054: domain 4 of 4, from 215 to 243: score 39.8, E = 3.5e-07
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                      e+++aF+++D+Dg+G+Id +E+ allk l   
     bm00929   215    EFNKAFELYDQDGNGYIDENELDALLKDL    243  

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