hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-07423523/chunk_1/iprscan-20080807-07423523.nocrc
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Query sequence: bm00941
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF02886.7.ls   LBP / BPI / CETP family, C-terminal do   383.5     3e-112   1
PF02886.7.fs   LBP / BPI / CETP family, C-terminal do   381.7   1.1e-111   1
PF01273.15.fs  LBP / BPI / CETP family, N-terminal do   200.2    2.2e-58   1
PF01273.15.ls  LBP / BPI / CETP family, N-terminal do   202.0    1.3e-57   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF01273.15.fs    1/1      43   212 ..     1   205 []   200.2  2.2e-58
PF01273.15.ls    1/1      43   212 ..     1   205 []   202.0  1.3e-57
PF02886.7.fs     1/1     241   477 ..     1   268 []   381.7 1.1e-111
PF02886.7.ls     1/1     241   477 ..     1   268 []   383.5   3e-112

Alignments of top-scoring domains:
PF01273.15.fs: domain 1 of 1, from 43 to 212: score 200.2, E = 2.2e-58
                   *->gLdyakqlglkaLqkeLqkiqlpdilgtegikllGLlGvligvllvd
                      +L+++kq+gl++L++eL++i++pd++g+eg                 
     bm00941    43    ALELVKQEGLRFLEQELETITIPDLRGKEG----------------- 72   

                   kvkynitnlkIsnlqlpssqlelspggglllliiplslsvsglkwplrtw
                   +++yni+++k+++lql ss l+++p ++l+l+i+++sl++++ + +l++w
     bm00941    73 HFYYNISEVKVTELQLTSSELDFQPQQELMLQITNASLGLRF-RRQLLYW 121  

                   lfl.gpeflklsDsGsFdLsvvgvnitaslrlerdptTGrptvvlseCss
                   +f++g+++ +          ++gv+i+++l+l rdp+ Gr++v+ ++C++
     bm00941   122 FFYdGGYINAS---------AEGVSIRTGLELSRDPA-GRMKVSNVSCQA 161  

                   npgsisisllggrlslllgwlldlfsnllektLpklLqgqlCPviessvn
                   +++++++ ++g+     +++++d++s+++++++++lL++q+CPv++++ +
     bm00941   162 SVSRMHAAFGGT-----FKKVYDFLSTFITSGMRFLLNQQICPVLYHAGT 206  

                   slNvhLstl<-*
                    l   L++l   
     bm00941   207 VL---LNSL    212  

PF01273.15.ls: domain 1 of 1, from 43 to 212: score 202.0, E = 1.3e-57
                   *->gLdyakqlglkaLqkeLqkiqlpdilgtegikllGLlGvligvllvd
                      +L+++kq+gl++L++eL++i++pd++g+eg                 
     bm00941    43    ALELVKQEGLRFLEQELETITIPDLRGKEG----------------- 72   

                   kvkynitnlkIsnlqlpssqlelspggglllliiplslsvsglkwplrtw
                   +++yni+++k+++lql ss l+++p ++l+l+i+++sl++++ + +l++w
     bm00941    73 HFYYNISEVKVTELQLTSSELDFQPQQELMLQITNASLGLRF-RRQLLYW 121  

                   lfl.gpeflklsDsGsFdLsvvgvnitaslrlerdptTGrptvvlseCss
                   +f++g+++ +          ++gv+i+++l+l rdp+ Gr++v+ ++C++
     bm00941   122 FFYdGGYINAS---------AEGVSIRTGLELSRDPA-GRMKVSNVSCQA 161  

                   npgsisisllggrlslllgwlldlfsnllektLpklLqgqlCPviessvn
                   +++++++ ++g+     +++++d++s+++++++++lL++q+CPv++++ +
     bm00941   162 SVSRMHAAFGGT-----FKKVYDFLSTFITSGMRFLLNQQICPVLYHAGT 206  

                   slNvhLstl<-*
                    l   L++l   
     bm00941   207 VL---LNSL    212  

PF02886.7.fs: domain 1 of 1, from 241 to 477: score 381.7, E = 1.1e-111
                   *->stLdvmfKgeisydGQGdTeFfplnhrspvrflppvealpsveehdR
                      s+Ld++f+      G    +Ffpl++r++++++++ve+++  +e++R
     bm00941   241    SNLDMDFR------G----AFFPLTERNWSLPNRAVEPQL--QEEER 275  

                   MvyfaiSdyvfnSallvyhraGfLkltltddmiPadsdlrttClttCGPa
                   Mvy+a+S+++f+Sa+++y+raG+L+l+l++d++P+d+d++   l++    
     bm00941   276 MVYVAFSEFFFDSAMESYFRAGALQLLLVGDKVPHDLDML---LRA---- 318  

                   GkcfgtflpeLaeqfPnmqlelevsalsaPlisfqpkngltvslsasvna
                    ++fg ++++L++++++++l+le+++l++P+++++p+ g+t+s++asv++
     bm00941   319 -TYFG-SIVLLSPAVIDSPLKLELRVLAPPRCTIKPS-GTTISVTASVTI 365  

                   fvvlskPnstsreqvftldvdtnasvtlsingkklvGslklrklqlelke
                   ++v+  P++ +++q++++++d+++s++++++gk+l+++l+lr++++++++
     bm00941   366 ALVP--PDQ-PEVQLSSMTMDARLSAKMALRGKALRTQLDLRRFRIYSNH 412  

                   SkvglfsveslqalLnymittlleplvnekLqkGfplPlpskgiqLPskd
                   S+++++++++lqa+L++m++++++p++ne++++G+++Plp +gi++  ++
     bm00941   413 SALESLALIPLQAPLKTMLQIGVMPMLNERTWRGVQIPLP-EGINF--VH 459  

                   lhnPelqiHdrFLllgaDvqy<-*
                   ++   +++H++FL++gaD+++   
     bm00941   460 EV---VTNHAGFLTIGADLHF    477  

PF02886.7.ls: domain 1 of 1, from 241 to 477: score 383.5, E = 3e-112
                   *->stLdvmfKgeisydGQGdTeFfplnhrspvrflppvealpsveehdR
                      s+Ld++f+      G    +Ffpl++r++++++++ve+++  +e++R
     bm00941   241    SNLDMDFR------G----AFFPLTERNWSLPNRAVEPQL--QEEER 275  

                   MvyfaiSdyvfnSallvyhraGfLkltltddmiPadsdlrttClttCGPa
                   Mvy+a+S+++f+Sa+++y+raG+L+l+l++d++P+d+d++   l++    
     bm00941   276 MVYVAFSEFFFDSAMESYFRAGALQLLLVGDKVPHDLDML---LRA---- 318  

                   GkcfgtflpeLaeqfPnmqlelevsalsaPlisfqpkngltvslsasvna
                    ++fg ++++L++++++++l+le+++l++P+++++p+ g+t+s++asv++
     bm00941   319 -TYFG-SIVLLSPAVIDSPLKLELRVLAPPRCTIKPS-GTTISVTASVTI 365  

                   fvvlskPnstsreqvftldvdtnasvtlsingkklvGslklrklqlelke
                   ++v+  P++ +++q++++++d+++s++++++gk+l+++l+lr++++++++
     bm00941   366 ALVP--PDQ-PEVQLSSMTMDARLSAKMALRGKALRTQLDLRRFRIYSNH 412  

                   SkvglfsveslqalLnymittlleplvnekLqkGfplPlpskgiqLPskd
                   S+++++++++lqa+L++m++++++p++ne++++G+++Plp +gi++  ++
     bm00941   413 SALESLALIPLQAPLKTMLQIGVMPMLNERTWRGVQIPLP-EGINF--VH 459  

                   lhnPelqiHdrFLllgaDvqy<-*
                   ++   +++H++FL++gaD+++   
     bm00941   460 EV---VTNHAGFLTIGADLHF    477  

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