hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-07423523/chunk_1/iprscan-20080807-07423523.nocrc
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Query sequence: bm00941
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00329                                                 283.1    2.1e-80   1
SM00328                                                 251.9    5.3e-71   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00328    1/1      38   256 ..     1   261 []   251.9  5.3e-71
SM00329    1/1     271   473 ..     1   218 []   283.1  2.1e-80

Alignments of top-scoring domains:
SM00328: domain 1 of 1, from 38 to 256: score 251.9, E = 5.3e-71
                   *->RitqkgLdyaaqegalaLqkeLlkitiPdirgdfkikllgggglLsl
                      R+t+k+L  ++qeg+++L++eL++itiPd rg++             
     bm00941    38    RVTSKALELVKQEGLRFLEQELETITIPDLRGKE------------- 71   

                   GkgsysiyeLsisrlelpsevisqlrfqPskGlrlsisnlslrvsgdlka
                   G+++y+i+e+++++l+l+s   s+l+fqP + l l+i n+sl+++++++ 
     bm00941    72 GHFYYNISEVKVTELQLTS---SELDFQPQQELMLQITNASLGLRFRRQL 118  

                   slnfpLLlmpikleGefqlsveglsisaelriesnptCDSGrptvtlssC
                   +++f      ++ +G++++s+eg+si+++l ++++p+   Gr +v + sC
     bm00941   119 LYWF------FYDGGYINASAEGVSIRTGLELSRDPA---GRMKVSNVSC 159  

                   sssigdvrlafeNGgsvlgwlinlfrkfIenqlrkvLedqiCpvidsavs
                    +s++ ++ af   g+++  ++ ++++fI++ +r+ L++qiCpv+++a +
     bm00941   160 QASVSRMHAAF---GGTFKKVYDFLSTFITSGMRFLLNQQICPVLYHAGT 206  

                   nklndkpagLqtlplsislstgalddlagvdyslvspprvtksidDvaef
                   ++ln++   L+t+p+++s+     d l g+dysl+++p+++       ++
     bm00941   207 VLLNSL---LDTVPVRSSV-----DELVGIDYSLMKDPVAS------TSN 242  

                   ldvelkgkffwlnh<-*
                   ld++++g ff+l++   
     bm00941   243 LDMDFRGAFFPLTE    256  

SM00329: domain 1 of 1, from 271 to 473: score 283.1, E = 2.1e-80
                   *->pdsdrMvylalSeyffnSllfvaqqaDGaLkltitddmlPkelkfll
                      ++++rMvy+a+Se+ff+S+++ +++a GaL+l++ +d++P++l++ll
     bm00941   271    QEEERMVYVAFSEFFFDSAMESYFRA-GALQLLLVGDKVPHDLDMLL 316  

                   TtcdvfcfgtlvPevaeqyPdsrtlqLeisvlspPrvtlqpkgatviivr
                   +++   +fg++v  +++ ++ds +l+Le++vl pPr+t++p+g+t+++  
     bm00941   317 RAT---YFGSIV-LLSPAVIDS-PLKLELRVLAPPRCTIKPSGTTISV-- 359  

                   ehasvkvfailpdsvrsrsreslfllsvdtnlsaklslktkkllgelkld
                    +asv++  ++pd+    ++++l+++++d++lsak++l++k l+++l+l+
     bm00941   360 -TASVTIALVPPDQ----PEVQLSSMTMDARLSAKMALRGKALRTQLDLR 404  

                   klkvelDKkhSnvggfdaelLeallnylvpavllPkvnekLerGvpLPlp
                   ++++++  +hS+++++   +L+a+l+++++++++P++ne+++rGv++Plp
     bm00941   405 RFRIYS--NHSALESLALIPLQAPLKTMLQIGVMPMLNERTWRGVQIPLP 452  

                   kgvqlidlvlqvhddfllLga<-*
                   +g++++++v+++h +fl++ga   
     bm00941   453 EGINFVHEVVTNHAGFLTIGA    473  

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