hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-07535568/chunk_1/iprscan-20080807-07535568.nocrc
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Query sequence: bm00977
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00134.13.fs Cyclin, N-terminal domain                       84.7    7.6e-24   1
PF00134.13.ls Cyclin, N-terminal domain                       85.7    1.3e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00134.13.ls   1/1      21   150 ..     1   146 []    85.7  1.3e-22
PF00134.13.fs   1/1      35   150 ..    16   146 .]    84.7  7.6e-24

Alignments of top-scoring domains:
PF00134.13.ls: domain 1 of 1, from 21 to 150: score 85.7, E = 1.3e-22
                   *->diyaylrelEeeylplpppdyld.qqpqpdsidinpkMRaiLvDWLv
                        ++  + +E+++  +++ + + ++q       + p+ R  ++ WL 
     bm00977    21    FLLEKAITREAQMW-KVNVRKMPsNQN------VSPSQRDEVIQWLA 60   

                   eVhekfkLlpeTLyLavnylDRFLskkpvpklkvprkklQLvGvtaLliA
                   ++  +f+L peT+ La ++lD FL+ + +      +k l  ++++++++A
     bm00977    61 KLKYQFNLYPETFALASSLLDGFLATV-K----AHPKYLSCIAISCFFLA 105  

                   sK.yEEiksdvypPevedfvyitasDnqaytkkeilrMEkliLktLkfdl
                   +K++EE++   + P ++ ++  +   +  ++  eilrME+ iL++L++dl
     bm00977   106 AKtVEEDE---RIPVLKVLARDS--FC-GCSSSEILRMERIILDKLNWDL 149  

                   s<-*
                       
     bm00977   150 H    150  

PF00134.13.fs: domain 1 of 1, from 35 to 150: score 84.7, E = 7.6e-24
                   *->lpppdyld.qqpqpdsidinpkMRaiLvDWLveVhekfkLlpeTLyL
                      +++ + + ++q       + p+ R  ++ WL ++  +f+L peT+ L
     bm00977    35    KVNVRKMPsNQN------VSPSQRDEVIQWLAKLKYQFNLYPETFAL 75   

                   avnylDRFLskkpvpklkvprkklQLvGvtaLliAsK.yEEiksdvypPe
                   a ++lD FL+ + +      +k l  ++++++++A+K++EE++   + P 
     bm00977    76 ASSLLDGFLATV-K----AHPKYLSCIAISCFFLAAKtVEEDE---RIPV 117  

                   vedfvyitasDnqaytkkeilrMEkliLktLkfdls<-*
                   ++ ++  +   +  ++  eilrME+ iL++L++dl    
     bm00977   118 LKVLARDS--FC-GCSSSEILRMERIILDKLNWDLH    150  

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