hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-20354178/chunk_1/iprscan-20090617-20354178.nocrc
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Query sequence: bm00978
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00651.21.fs BTB/POZ domain                                 139.6      8e-39   2
PF00651.21.ls BTB/POZ domain                                 137.9    2.6e-38   1
PF00917.16.fs MATH domain                                     80.7    3.7e-25   1
PF00917.16.ls MATH domain                                     82.5    1.2e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00917.16.fs   1/1      38   163 ..     1   150 []    80.7  3.7e-25
PF00917.16.ls   1/1      38   163 ..     1   150 []    82.5  1.2e-21
PF00651.21.fs   1/2     190   297 ..     1   135 []   136.1  8.9e-38
PF00651.21.ls   1/1     190   297 ..     1   135 []   137.9  2.6e-38

Alignments of top-scoring domains:
PF00917.16.fs: domain 1 of 1, from 38 to 163: score 80.7, E = 3.7e-25
                   *->iknfSkikk...egesyytspyeerfnipWrllriyrngggs.rhgk
                      i nfS ++++ +e+  ++t+++     ++W+ lr++++g ++++ + 
     bm00978    38    INNFSFCREemgEVIKSSTFSSGANDKLKWC-LRVNPKGLDEeS-KD 82   

                   flglyLhClkeekdsetsenlkWsietefqlklvsdnGksirRmssvtls
                   +l+lyL       ++     +k +++++f++ ++++ G          ++
     bm00978    83 YLSLYLL----LVSC-----PKSEVRAKFKFSILNAKGE---------ET 114  

                   kkikdainnshtFdkptkgeGwgksGykkFisWddleddyrgylvdDsii
                   k +++     + F    k++G++k     Fi++d l+d+ +g+l+dD+++
     bm00978   115 KAMES--QRAYRFVQG-KDWGFKK-----FIRRDFLLDEANGLLPDDKLT 156  

                   iEaeVkI<-*
                   +++eV +   
     bm00978   157 LFCEVSV    163  

PF00917.16.ls: domain 1 of 1, from 38 to 163: score 82.5, E = 1.2e-21
                   *->iknfSkikk...egesyytspyeerfnipWrllriyrngggs.rhgk
                      i nfS ++++ +e+  ++t+++     ++W+ lr++++g ++++ + 
     bm00978    38    INNFSFCREemgEVIKSSTFSSGANDKLKWC-LRVNPKGLDEeS-KD 82   

                   flglyLhClkeekdsetsenlkWsietefqlklvsdnGksirRmssvtls
                   +l+lyL       ++     +k +++++f++ ++++ G          ++
     bm00978    83 YLSLYLL----LVSC-----PKSEVRAKFKFSILNAKGE---------ET 114  

                   kkikdainnshtFdkptkgeGwgksGykkFisWddleddyrgylvdDsii
                   k +++     + F    k++G++k     Fi++d l+d+ +g+l+dD+++
     bm00978   115 KAMES--QRAYRFVQG-KDWGFKK-----FIRRDFLLDEANGLLPDDKLT 156  

                   iEaeVkI<-*
                   +++eV +   
     bm00978   157 LFCEVSV    163  

PF00651.21.fs: domain 1 of 2, from 190 to 297: score 136.1, E = 8.9e-38
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      l  l ++  ++D+ L v         g++f AHKa+Laa+Sp+F a+
     bm00978   190    LGGLWENSRFTDCCLCVA--------GQEFQAHKAILAARSPVFSAM 228  

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F++       +ees+++ ++e++dv+pe+f++++ fiYtg+++       
     bm00978   229 FEHE------MEESKKN-RVEINDVEPEVFKEMMCFIYTGKAPNL----- 266  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                         +++++dlLaaA d++ +++l+ +Ce+ l+ +l   
     bm00978   267 ------DKMADDLLAAA-DKYALERLKVMCEDALCSNL    297  

PF00651.21.ls: domain 1 of 1, from 190 to 297: score 137.9, E = 2.6e-38
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      l  l ++  ++D+ L v         g++f AHKa+Laa+Sp+F a+
     bm00978   190    LGGLWENSRFTDCCLCVA--------GQEFQAHKAILAARSPVFSAM 228  

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F++       +ees+++ ++e++dv+pe+f++++ fiYtg+++       
     bm00978   229 FEHE------MEESKKN-RVEINDVEPEVFKEMMCFIYTGKAPNL----- 266  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                         +++++dlLaaA d++ +++l+ +Ce+ l+ +l   
     bm00978   267 ------DKMADDLLAAA-DKYALERLKVMCEDALCSNL    297  

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