hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-07592019/chunk_1/iprscan-20080807-07592019.nocrc
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Query sequence: bm00984
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)    128.8    5.5e-43   1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)    130.6    3.9e-36   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.fs   1/1      70   323 ..     1   272 []   128.8  5.5e-43
PF00001.12.ls   1/1      70   323 ..     1   272 []   130.6  3.9e-36

Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 70 to 323: score 128.8, E = 5.5e-43
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      +Nl V+lv++r+ + + p+ +++++L ++DLL +++    +l+    
     bm00984    70    ENLAVLLVLGRHPRFHAPMFLLLGSLTLSDLLAGAAYAANILLSGPL 116  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                     +  +++al+    + ++v+++aS+l+L+aI+++R  + + + r ++ +
     bm00984   117 --TLKLSPALWFAREGGVFVALTASVLSLLAIALER--SLTMARRGPAPV 162  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   +s+ r++++ +++W ++lll+l+p+l++++    +         C+   p
     bm00984   163 SSRGRTLAMAAAAWGVSLLLGLLPALGWNCLGRLDA--------CSTVLP 204  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                     +           ++l+++++Fv  l  i+ +Y rI++ +r+ ar++++
     bm00984   205 LYA---------KAYVLFCVLAFVGILAAICALYARIYCQVRANARRLPA 245  

                   ...........kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.
                   ++++ ++++++++r+ +   +++tl vv+++Fv CW P+f++llld+ c+
     bm00984   246 rpgtagttstrARRKPRSLALLRTLSVVLLAFVACWGPLFLLLLLDVACp 295  

                   lsiimsssCelervlptallvtlwLayvNsclNPiIY<-*
                              ++ +    + +l La++Ns lNPiIY   
     bm00984   296 AR---------TCPVLLQADPFLGLAMANSLLNPIIY    323  

PF00001.12.ls: domain 1 of 1, from 70 to 323: score 130.6, E = 3.9e-36
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      +Nl V+lv++r+ + + p+ +++++L ++DLL +++    +l+    
     bm00984    70    ENLAVLLVLGRHPRFHAPMFLLLGSLTLSDLLAGAAYAANILLSGPL 116  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                     +  +++al+    + ++v+++aS+l+L+aI+++R  + + + r ++ +
     bm00984   117 --TLKLSPALWFAREGGVFVALTASVLSLLAIALER--SLTMARRGPAPV 162  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   +s+ r++++ +++W ++lll+l+p+l++++    +         C+   p
     bm00984   163 SSRGRTLAMAAAAWGVSLLLGLLPALGWNCLGRLDA--------CSTVLP 204  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                     +           ++l+++++Fv  l  i+ +Y rI++ +r+ ar++++
     bm00984   205 LYA---------KAYVLFCVLAFVGILAAICALYARIYCQVRANARRLPA 245  

                   ...........kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.
                   ++++ ++++++++r+ +   +++tl vv+++Fv CW P+f++llld+ c+
     bm00984   246 rpgtagttstrARRKPRSLALLRTLSVVLLAFVACWGPLFLLLLLDVACp 295  

                   lsiimsssCelervlptallvtlwLayvNsclNPiIY<-*
                              ++ +    + +l La++Ns lNPiIY   
     bm00984   296 AR---------TCPVLLQADPFLGLAMANSLLNPIIY    323  

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