# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm01113.fasta.nr -Q bm01113.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm01113, 152 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6814653 sequences Expectation_n fit: rho(ln(x))= 4.7474+/-0.000181; mu= 8.3288+/- 0.010 mean_var=64.3204+/-12.766, 0's: 33 Z-trim: 106 B-trim: 2791 in 1/65 Lambda= 0.159919 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62089120|dbj|BAD93004.1| mel transforming oncog ( 152) 1055 251.3 3.5e-65 gi|90079487|dbj|BAE89423.1| unnamed protein produc ( 165) 695 168.3 3.8e-40 gi|148678838|gb|EDL10785.1| RAB8A, member RAS onco ( 138) 693 167.8 4.5e-40 gi|93279750|pdb|2FU5|C Chain C, Structure Of Rab8 ( 183) 673 163.2 1.4e-38 gi|148678840|gb|EDL10787.1| RAB8A, member RAS onco ( 185) 673 163.2 1.4e-38 gi|49522647|gb|AAH71176.1| Rab8a protein [Rattus n ( 206) 673 163.3 1.5e-38 gi|2118463|pir||I78851 GTP-binding protein MEL - m ( 206) 673 163.3 1.5e-38 gi|234746|gb|AAB19681.1| RAS-related protein MEL [ ( 206) 673 163.3 1.5e-38 gi|82592519|sp|P55258|RAB8A_MOUSE Ras-related prot ( 207) 673 163.3 1.5e-38 gi|75070428|sp|Q5R4A3.1|RAB8A_PONAB Ras-related pr ( 207) 673 163.3 1.5e-38 gi|158513560|sp|A4FV54.1|RAB8A_BOVIN Ras-related p ( 207) 673 163.3 1.5e-38 gi|46577633|sp|P61007|RAB8A_CANFA Ras-related prot ( 207) 673 163.3 1.5e-38 gi|30585389|gb|AAP36967.1| Homo sapiens mel transf ( 208) 673 163.3 1.5e-38 gi|74152890|dbj|BAE27741.1| unnamed protein produc ( 208) 673 163.3 1.5e-38 gi|125858678|gb|AAI29779.1| LOC100037230 protein [ ( 205) 669 162.4 2.8e-38 gi|159461696|gb|ABW96887.1| Rab8 [Danio rerio] ( 136) 665 161.3 3.9e-38 gi|133778680|gb|AAI34060.1| Zgc:162699 protein [Da ( 207) 665 161.4 5.4e-38 gi|47223089|emb|CAG07176.1| unnamed protein produc ( 251) 665 161.5 6.3e-38 gi|184186107|ref|NP_001116975.1| GTPase homolog [S ( 207) 661 160.5 1e-37 gi|149028911|gb|EDL84252.1| RAB8B, member RAS onco ( 175) 658 159.8 1.5e-37 gi|193652377|ref|XP_001950584.1| PREDICTED: simila ( 224) 659 160.1 1.5e-37 gi|26341800|dbj|BAC34562.1| unnamed protein produc ( 191) 658 159.8 1.6e-37 gi|148694184|gb|EDL26131.1| RAB8B, member RAS onco ( 192) 658 159.8 1.6e-37 gi|50752811|ref|XP_413757.1| PREDICTED: similar to ( 201) 658 159.8 1.6e-37 gi|140832723|gb|AAI35799.1| Rab8b protein [Xenopus ( 205) 658 159.8 1.7e-37 gi|13638434|sp|Q92930|RAB8B_HUMAN Ras-related prot ( 207) 658 159.8 1.7e-37 gi|51873938|gb|AAH78493.1| MGC85265 protein [Xenop ( 207) 658 159.8 1.7e-37 gi|117558080|gb|AAI27331.1| Rab8b protein [Xenopus ( 207) 658 159.8 1.7e-37 gi|116255981|sp|Q2HJI8|RAB8B_BOVIN Ras-related pro ( 207) 658 159.8 1.7e-37 gi|2500066|sp|P70550|RAB8B_RAT Ras-related protein ( 207) 658 159.8 1.7e-37 gi|126277017|ref|XP_001366139.1| PREDICTED: simila ( 207) 658 159.8 1.7e-37 gi|75070935|sp|Q5REC9.1|RAB8B_PONAB Ras-related pr ( 207) 658 159.8 1.7e-37 gi|148744724|gb|AAI42847.1| Zgc:165529 protein [Da ( 209) 658 159.8 1.7e-37 gi|82231235|sp|Q5F470|RAB8A_CHICK Ras-related prot ( 207) 657 159.6 2e-37 gi|156551213|ref|XP_001600682.1| PREDICTED: simila ( 209) 655 159.1 2.7e-37 gi|50604253|gb|AAH78133.1| Rab8b-prov protein [Xen ( 207) 652 158.4 4.3e-37 gi|91083485|ref|XP_971858.1| PREDICTED: similar to ( 221) 652 158.5 4.6e-37 gi|156220146|gb|EDO41018.1| predicted protein [Nem ( 206) 651 158.2 5.1e-37 gi|158591043|gb|EDP29656.1| Rab family protein 8, ( 237) 650 158.0 6.6e-37 gi|131848|sp|P22128|RAB8_DISOM Ras-related protein ( 210) 649 157.8 7.1e-37 gi|47225841|emb|CAF98321.1| unnamed protein produc ( 207) 648 157.5 8.2e-37 gi|108873652|gb|EAT37877.1| ras-related protein Ra ( 208) 648 157.5 8.3e-37 gi|167866246|gb|EDS29629.1| ras-related protein Ra ( 209) 648 157.5 8.3e-37 gi|194206583|ref|XP_001918101.1| PREDICTED: simila ( 207) 646 157.1 1.1e-36 gi|190585663|gb|EDV25731.1| conserved hypothetical ( 216) 645 156.8 1.4e-36 gi|120537782|gb|AAI29422.1| Zgc:158741 [Danio reri ( 184) 640 155.6 2.7e-36 gi|194113202|gb|EDW35245.1| GL15675 [Drosophila pe ( 207) 640 155.7 3e-36 gi|193920352|gb|EDW19219.1| GI13664 [Drosophila mo ( 207) 640 155.7 3e-36 gi|2313045|dbj|BAA21711.1| rab8 [Drosophila melano ( 207) 640 155.7 3e-36 gi|193898638|gb|EDV97504.1| GH16908 [Drosophila gr ( 207) 640 155.7 3e-36 >>gi|62089120|dbj|BAD93004.1| mel transforming oncogene (152 aa) initn: 1055 init1: 1055 opt: 1055 Z-score: 1325.3 bits: 251.3 E(): 3.5e-65 Smith-Waterman score: 1055; 100.000% identity (100.000% similar) in 152 aa overlap (1-152:1-152) 10 20 30 40 50 60 bm0111 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 10 20 30 40 50 60 70 80 90 100 110 120 bm0111 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEVRPSGSSHCPCFSPCPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEVRPSGSSHCPCFSPCPR 70 80 90 100 110 120 130 140 150 bm0111 ALWFTHEKAKVQRHIQATCPQPPSQGHGGSRD :::::::::::::::::::::::::::::::: gi|620 ALWFTHEKAKVQRHIQATCPQPPSQGHGGSRD 130 140 150 >>gi|90079487|dbj|BAE89423.1| unnamed protein product [M (165 aa) initn: 712 init1: 672 opt: 695 Z-score: 876.0 bits: 168.3 E(): 3.8e-40 Smith-Waterman score: 695; 76.027% identity (84.932% similar) in 146 aa overlap (1-146:6-146) 10 20 30 40 50 bm0111 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|900 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 10 20 30 40 50 60 60 70 80 90 100 110 bm0111 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEVRPSGSSHCPCF ::::::::::::.::::::::::::::::::::::::::::::::::: . . : gi|900 IWDTAGQERFRTVTTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADINVENAF 70 80 90 100 110 120 120 130 140 150 bm0111 SPCPRALWFTHEKAKVQRHIQATCPQPPSQGHGGSRD : . :::........ :: .:: gi|900 FTLARDI-----KAKMDKKLEGNSPQGSNQGVKITPDQQKRSSFFRCVLL 130 140 150 160 >>gi|148678838|gb|EDL10785.1| RAB8A, member RAS oncogene (138 aa) initn: 697 init1: 673 opt: 693 Z-score: 874.5 bits: 167.8 E(): 4.5e-40 Smith-Waterman score: 693; 95.575% identity (96.460% similar) in 113 aa overlap (1-111:6-118) 10 20 30 40 50 bm0111 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 10 20 30 40 50 60 60 70 80 90 100 110 bm0111 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEV--RPSGSSHCP :::::::::::::::::::::::::::::::::::::::::::::::: :.:::: gi|148 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEEGNSPQGSSHGV 70 80 90 100 110 120 120 130 140 150 bm0111 CFSPCPRALWFTHEKAKVQRHIQATCPQPPSQGHGGSRD gi|148 KITVEQQKRTSFFRCSLL 130 >>gi|93279750|pdb|2FU5|C Chain C, Structure Of Rab8 In C (183 aa) initn: 673 init1: 673 opt: 673 Z-score: 847.9 bits: 163.2 E(): 1.4e-38 Smith-Waterman score: 673; 100.000% identity (100.000% similar) in 103 aa overlap (1-103:6-108) 10 20 30 40 50 bm0111 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|932 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 10 20 30 40 50 60 60 70 80 90 100 110 bm0111 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEVRPSGSSHCPCF :::::::::::::::::::::::::::::::::::::::::::::::: gi|932 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 70 80 90 100 110 120 120 130 140 150 bm0111 SPCPRALWFTHEKAKVQRHIQATCPQPPSQGHGGSRD gi|932 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKAT 130 140 150 160 170 180 >>gi|148678840|gb|EDL10787.1| RAB8A, member RAS oncogene (185 aa) initn: 735 init1: 673 opt: 673 Z-score: 847.9 bits: 163.2 E(): 1.4e-38 Smith-Waterman score: 673; 100.000% identity (100.000% similar) in 103 aa overlap (1-103:6-108) 10 20 30 40 50 bm0111 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 10 20 30 40 50 60 60 70 80 90 100 110 bm0111 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEVRPSGSSHCPCF :::::::::::::::::::::::::::::::::::::::::::::::: gi|148 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 70 80 90 100 110 120 120 130 140 150 bm0111 SPCPRALWFTHEKAKVQRHIQATCPQPPSQGHGGSRD gi|148 NKCDVNDKRQVSKERGEKAFFTLARDIKAKMDKKLEGNSPQGSSHGVKITVEQQKRTSFF 130 140 150 160 170 180 >>gi|49522647|gb|AAH71176.1| Rab8a protein [Rattus norve (206 aa) initn: 735 init1: 673 opt: 673 Z-score: 847.2 bits: 163.3 E(): 1.5e-38 Smith-Waterman score: 673; 100.000% identity (100.000% similar) in 103 aa overlap (1-103:5-107) 10 20 30 40 50 bm0111 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|495 AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 10 20 30 40 50 60 60 70 80 90 100 110 bm0111 WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEVRPSGSSHCPCFS ::::::::::::::::::::::::::::::::::::::::::::::: gi|495 WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 70 80 90 100 110 120 120 130 140 150 bm0111 PCPRALWFTHEKAKVQRHIQATCPQPPSQGHGGSRD gi|495 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNS 130 140 150 160 170 180 >>gi|2118463|pir||I78851 GTP-binding protein MEL - mouse (206 aa) initn: 673 init1: 673 opt: 673 Z-score: 847.2 bits: 163.3 E(): 1.5e-38 Smith-Waterman score: 673; 100.000% identity (100.000% similar) in 103 aa overlap (1-103:6-108) 10 20 30 40 50 bm0111 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|211 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 10 20 30 40 50 60 60 70 80 90 100 110 bm0111 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEVRPSGSSHCPCF :::::::::::::::::::::::::::::::::::::::::::::::: gi|211 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 70 80 90 100 110 120 120 130 140 150 bm0111 SPCPRALWFTHEKAKVQRHIQATCPQPPSQGHGGSRD gi|211 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKAT 130 140 150 160 170 180 >>gi|234746|gb|AAB19681.1| RAS-related protein MEL [Homo (206 aa) initn: 698 init1: 673 opt: 673 Z-score: 847.2 bits: 163.3 E(): 1.5e-38 Smith-Waterman score: 673; 100.000% identity (100.000% similar) in 103 aa overlap (1-103:6-108) 10 20 30 40 50 bm0111 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|234 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 10 20 30 40 50 60 60 70 80 90 100 110 bm0111 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEVRPSGSSHCPCF :::::::::::::::::::::::::::::::::::::::::::::::: gi|234 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 70 80 90 100 110 120 120 130 140 150 bm0111 SPCPRALWFTHEKAKVQRHIQATCPQPPSQGHGGSRD gi|234 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKWKAT 130 140 150 160 170 180 >>gi|82592519|sp|P55258|RAB8A_MOUSE Ras-related protein (207 aa) initn: 735 init1: 673 opt: 673 Z-score: 847.2 bits: 163.3 E(): 1.5e-38 Smith-Waterman score: 673; 100.000% identity (100.000% similar) in 103 aa overlap (1-103:6-108) 10 20 30 40 50 bm0111 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|825 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 10 20 30 40 50 60 60 70 80 90 100 110 bm0111 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEVRPSGSSHCPCF :::::::::::::::::::::::::::::::::::::::::::::::: gi|825 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 70 80 90 100 110 120 120 130 140 150 bm0111 SPCPRALWFTHEKAKVQRHIQATCPQPPSQGHGGSRD gi|825 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGN 130 140 150 160 170 180 >>gi|75070428|sp|Q5R4A3.1|RAB8A_PONAB Ras-related protei (207 aa) initn: 713 init1: 673 opt: 673 Z-score: 847.2 bits: 163.3 E(): 1.5e-38 Smith-Waterman score: 673; 100.000% identity (100.000% similar) in 103 aa overlap (1-103:6-108) 10 20 30 40 50 bm0111 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 10 20 30 40 50 60 60 70 80 90 100 110 bm0111 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEVRPSGSSHCPCF :::::::::::::::::::::::::::::::::::::::::::::::: gi|750 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 70 80 90 100 110 120 120 130 140 150 bm0111 SPCPRALWFTHEKAKVQRHIQATCPQPPSQGHGGSRD gi|750 NKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGN 130 140 150 160 170 180 152 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 08:08:08 2008 done: Thu Aug 7 08:11:05 2008 Total Scan time: 563.810 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]