hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-08110513/chunk_1/iprscan-20080807-08110513.nocrc
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Query sequence: bm01113
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00071.12.fs Ras family                                     232.6    4.8e-69   1
PF00071.12.ls Ras family                                     163.3    5.9e-46   1
PF08477.3.fs Miro-like protein                               55.4    1.2e-15   1
PF08477.3.ls Miro-like protein                               47.4    4.5e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08477.3.fs   1/1       5   115 ..     1   132 [.    55.4  1.2e-15
PF00071.12.fs   1/1       5   106 ..     1   102 [.   232.6  4.8e-69
PF08477.3.ls   1/1       5   119 ..     1   139 []    47.4  4.5e-11
PF00071.12.ls   1/1       5   141 ..     1   174 []   163.3  5.9e-46

Alignments of top-scoring domains:
PF08477.3.fs: domain 1 of 1, from 5 to 115: score 55.4, E = 1.2e-15
                   *->kvvViGdkgvGKSSllqallgeefppniPrvLpkkklpreiqgstya
                      k+ +iGd gvGK+  l ++  + f           ++   ++g++  
     bm01113     5    KLLLIGDSGVGKTCVLFRFSEDAFN----------STFISTIGIDFK 41   

                   vdtlevdgdtklenvrlkefllilwDtggreelkfehepiAymktaDavl
                   + t+e+dg++++         l +wDt+g+e++ +  +  Ay   a +++
     bm01113    42 IRTIELDGKRIK---------LQIWDTAGQERFRT--ITTAYYRGAMGIM 80   

                   lvyDlsdpeSfervsslikwlpnlrklgkkaiPvi<-*
                   lvyD ++++Sf+  ++ i  + + r++g++  P++   
     bm01113    81 LVYDITNEKSFDNIRNWIRNIEEVRPSGSSHCPCF    115  

PF00071.12.fs: domain 1 of 1, from 5 to 106: score 232.6, E = 4.8e-69
                   *->KlVlvGDgGVGKSsLliRFtdnkFpeeYipTIGvDFytktvevdgkt
                      Kl+l+GD+GVGK++ l+RF+++ F++ +i+TIG+DF+++t+e+dgk+
     bm01113     5    KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKR 51   

                   vkLqIWDTAGQErFralrpaYYRgAqGfLLVYDITsrdSFenvkkWleei
                   +kLqIWDTAGQErFr++++aYYRgA+G++LVYDIT+++SF+n+++W+++i
     bm01113    52 IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI 101  

                   lrhad<-*
                   +++ +   
     bm01113   102 EEVRP    106  

PF08477.3.ls: domain 1 of 1, from 5 to 119: score 47.4, E = 4.5e-11
                   *->kvvViGdkgvGKSSllqallgeefppniPrvLpkkklpreiqgstya
                      k+ +iGd gvGK+  l ++  + f           ++   ++g++  
     bm01113     5    KLLLIGDSGVGKTCVLFRFSEDAFN----------STFISTIGIDFK 41   

                   vdtlevdgdtklenvrlkefllilwDtggreelkfehepiAymktaDavl
                   + t+e+dg++++         l +wDt+g+e++ +  +  Ay   a +++
     bm01113    42 IRTIELDGKRIK---------LQIWDTAGQERFRT--ITTAYYRGAMGIM 80   

                   lvyDlsdpeSfervsslikwlpnlrklgkkaiPvilvgnKlD<-*
                   lvyD ++++Sf+  ++ i  + + r++g++  P   + + +    
     bm01113    81 LVYDITNEKSFDNIRNWIRNIEEVRPSGSSHCP---CFSPCP    119  

PF00071.12.ls: domain 1 of 1, from 5 to 141: score 163.3, E = 5.9e-46
                   *->KlVlvGDgGVGKSsLliRFtdnkFpeeYipTIGvDFytktvevdgkt
                      Kl+l+GD+GVGK++ l+RF+++ F++ +i+TIG+DF+++t+e+dgk+
     bm01113     5    KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKR 51   

                   vkLqIWDTAGQErFralrpaYYRgAqGfLLVYDITsrdSFenvkkWleei
                   +kLqIWDTAGQErFr++++aYYRgA+G++LVYDIT+++SF+n+++W+++i
     bm01113    52 IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI 101  

                   lrhad.........kdenvpivLVGNKcDLeddedlelekqkRqVsteeG
                   +++ ++++++ +  +++                         R+  +   
     bm01113   102 EEVRPsgsshcpcfSPC------------------------PRALWFTH- 126  

                   ealAkelgAlpFmETSAKtneNVeeaFeelareilk<-*
                    + Ak                        +  ++++   
     bm01113   127 -EKAKVQR--------------------HIQATCPQ    141  

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