hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-08110513/chunk_1/iprscan-20080807-08110513.nocrc
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Query sequence: bm01113
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00175                                                 182.4    4.4e-50   1
SM00174                                                 -26.8    3.9e-07   1
SM00173                                                 -17.1    1.6e-06   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00173     1/1       1   134 [.     1   167 []   -17.1  1.6e-06
SM00175     1/1       4   138 ..     1   172 []   182.4  4.4e-50
SM00174     1/1       6   142 ..     1   180 []   -26.8  3.9e-07

Alignments of top-scoring domains:
SM00173: domain 1 of 1, from 1 to 134: score -17.1, E = 1.6e-06
                   *->mreYKlVVlGgGGVGKSALTiQFiqghFvdeYDPTIE.DSYrKqiei
                         +Kl   G+ GVGK++   +F +  F  +   TI  D+  + ie 
     bm01113     1    DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGiDFKIRTIEL 47   

                   DgevalLDILDTAGQeEFsAMRdqYmRtGeGFlLVYSitsrqSFeeikkf
                   Dg+  +L+I DTAGQe F      Y R   G  LVY it+ +SF+ i++ 
     bm01113    48 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 97   

                   reqIlRVKdrddvPivLVGNKcDLeneRqVsteEGkeLAkqlncpFlEtS
                    + I  V+ +                              + +cp +   
     bm01113    98 IRNIEEVRPS-----------------------------GSSHCPCF--- 115  

                   AKerinVdeaFydLVReirks<-*
                     ++      F +  + + ++   
     bm01113   116 --SPCPRALWFTHEKAKVQRH    134  

SM00175: domain 1 of 1, from 4 to 138: score 182.4, E = 4.4e-50
                   *->FKiilIGDSGVGKSsLLsRFtddkFsedsksTIGVDFktktievdGk
                      FK++lIGDSGVGK+++L+RF +d F++ ++sTIG+DFk++tie+dGk
     bm01113     4    FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGK 50   

                   rvKLQIWDTAGQERFRSiTssYYRGAvGalLVYDiTnreSFenlknWlke
                   r+KLQIWDTAGQERFR+iT++YYRGA+G++LVYDiTn++SF+n++nW++ 
     bm01113    51 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN 100  

                   lreyadpppenvvimLVGNKsDLeeqRqVstEeaekficDcAeehgllFi
                   ++e  ++  + +++      s + +          ++   +  +++ +  
     bm01113   101 IEEVRPSGSSHCPCF-----SPCPR----------AL---WFTHEKAKVQ 132  

                   fETSAKtntNVeeAFeelakkIlkr<-*
                                      ++I ++   
     bm01113   133 -------------------RHIQAT    138  

SM00174: domain 1 of 1, from 6 to 142: score -26.8, E = 3.9e-07
                   *->lVvVGDGaVGKTCLLisYTtnaFPedYVPTV.FENYsadvevpDgkp
                      l ++GD++VGKTC L +++++aF   ++ T++ +  + ++e  Dgk+
     bm01113     6    LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIgIDFKIRTIEL-DGKR 51   

                   vnLgLWDTAGQEdYDRLRPLSYPqtDVfLiCFSVdspaSfeNVkeKW...
                   ++L+ WDTAGQE +  +    Y ++  +++ +++++  Sf+N+++ W ++
     bm01113    52 IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-Wirn 100  

                   yPEvk....hfcPnvPiiLVGtKlDLRnDedtleelsekkqePvtteqGe
                   + Ev+++++ +cP+         + +   ++   + ++ k          
     bm01113   101 IEEVRpsgsSHCPCF--------SPCP--RALWFTHEKAK---------- 130  

                   anskialAkeIGAvkYlECSAltqeGvkeVFeeAiraaLnk<-*
                         + + I A                       ++ ++   
     bm01113   131 ------VQRHIQA-----------------------TCPQP    142  

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