hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-08110513/chunk_1/iprscan-20080807-08110513.nocrc
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Query sequence: bm01113
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
TIGR00231 small_GTP: small GTP-binding protein domain    57.9    1.1e-14   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
TIGR00231   1/1       1   152 []     1   186 []    57.9  1.1e-14

Alignments of top-scoring domains:
TIGR00231: domain 1 of 1, from 1 to 152: score 57.9, E = 1.1e-14
                   *->lkdikigivGdpnvGkstllnrllgnkgsitesgptdgttrdyvtes
                      ++ +k++++Gd +vGk+++l r++ +  +++   +  +++ d+  + 
     bm01113     1    DYLFKLLLIGDSGVGKTCVLFRFSEDA-FNSTFIS--TIGIDFKIRT 44   

                   ieedgktitgatfqWgykfnllDtpGlhrqedydalrrlyypevlsslev
                   ie+dgk          +k++++Dt+G   qe+++ ++ +yy+++ +++ v
     bm01113    45 IELDGKR---------IKLQIWDTAG---QERFRTITTAYYRGAMGIMLV 82   

                   ldlvilvldvedglekdtkeiihhadkygvpillvgnkidlkdekpgyfv
                   +d+++  ++++++   + + i+  ++ +g+     ++++           
     bm01113    83 YDITNE-KSFDNIR-NWIRNIEEVRP-SGSSHCPCFSPCPRAL------W 123  

                   dlkphlaslfaklngephfiplsaetgkgidslfglvea<-*
                    + ++ +  ++  +++p   p+s ++g + d           
     bm01113   124 FTHEKAKVQRHIQATCP--QPPSQGHGGSRD--------    152  

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