hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20100311/iprscan-20100311-17450783/chunk_1/iprscan-20100311-17450783.nocrc
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Query sequence: bm01140
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00450.12.ls Serine carboxypeptidase                   686.4     2e-203   1
PF00450.12.fs Serine carboxypeptidase                   684.5   7.5e-203   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00450.12.fs   1/1      56   494 ..     1   499 []   684.5 7.5e-203
PF00450.12.ls   1/1      56   494 ..     1   499 []   686.4   2e-203

Alignments of top-scoring domains:
PF00450.12.fs: domain 1 of 1, from 56 to 494: score 684.5, E = 7.5e-203
                   *->PGlgldqpsgvnFkqYsGYltvdesagraLFYWFvESennPetdPLv
                      PG  l  +  ++F+qYsGYl  +    ++L+YWFvES+++Pe+ P+v
     bm01140    56    PG--LAKQ--PSFRQYSGYLKGS--GSKHLHYWFVESQKDPENSPVV 96   

                   LWLNGGPGCSSlgYGlfeElGPFrvneyndggktLylNpYSWNkvANvLF
                   LWLNGGPGCSSl+ Gl++E+GPF+v+  +dg  tL++NpYSWN  ANvL+
     bm01140    97 LWLNGGPGCSSLD-GLLTEHGPFLVQ--PDG-VTLEYNPYSWNLIANVLY 142  

                   LDsPvGVGFSYsntssdlyttgDdetAkDnyeFLqkFFerFPeyknndFY
                   L+sP+GVGFSYs++++   +t+D+e+A+ n+e+Lq+FF  FPeyknn+++
     bm01140   143 LESPAGVGFSYSDDKFY--ATNDTEVAQSNFEALQDFFRLFPEYKNNKLF 190  

                   ItGESYAGhYVPqLaqeIldgnkkgekpniNLKGiaIGNGltdpatdyns
                   +tGESYAG+Y+P+La +++++         NL+G+a+GNGl +++++ ns
     bm01140   191 LTGESYAGIYIPTLAVLVMQDP------SMNLQGLAVGNGLSSYEQNDNS 234  

                   yvpmacfayyhglisdelyeslkkaCcgnyylsdldpsnteCyklveeas
                   +v    fayyhgl+   l+ sl+++Cc +++++++d+ + eC + ++e+ 
     bm01140   235 LVY---FAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNLQEVA 281  

                   gcvsnsesydvcnilnaaldengaagpyqtginpYnIytpccdnsslsal
                     v+ns                        g+n+Yn+y+pc     ++ +
     bm01140   282 RIVGNS------------------------GLNIYNLYAPCAGGVPSHFR 307  

                   ss.pkkrpqsgat.g.tkkllsrr.r.l.rkwiavswpstdtsggydpcd
                    ++++  +q++ + ++++ l++++++ l r+        ++  +++++ +
     bm01140   308 YEkDTVVVQDLGNiFtRLPLKRMWhQaLlRS-------GDKVRMDPPCTN 350  

                   esyaekYLNrpdVqkALHanvtkgsvyeWerCsdvvnnnfnwyyddsyks
                   +++a++YLN+p V+kAL+++     +++W +C++ v    n++y+  y+s
     bm01140   351 TTAASTYLNNPYVRKALNIP---EQLPQWDMCNFLV----NLQYRRLYRS 393  

                   mlpilkelleggynlRvLiYsGDtDmvcpflGtqawikklAaLnlsgkdp
                   m + + +ll++  ++ +L+Y+GD+Dm+c+f+G+++++++   Ln +   +
     bm01140   394 MNSQYLKLLSSQ-KYQILLYNGDVDMACNFMGDEWFVDS---LNQKMEVQ 439  

                   wrpWyvspwkvdgqvaGytkvYkggnnLtFaTVkGAGHmVPedqPeeALq
                   +rpW v+++++++q+aG++k++     ++F+T+kGAGHmVP+d+P +A++
     bm01140   440 RRPWLVKYGDSGEQIAGFVKEF-SH--IAFLTIKGAGHMVPTDKPLAAFT 486  

                   mfkrFlsg<-*
                   mf+rFl++   
     bm01140   487 MFSRFLNK    494  

PF00450.12.ls: domain 1 of 1, from 56 to 494: score 686.4, E = 2e-203
                   *->PGlgldqpsgvnFkqYsGYltvdesagraLFYWFvESennPetdPLv
                      PG  l  +  ++F+qYsGYl  +    ++L+YWFvES+++Pe+ P+v
     bm01140    56    PG--LAKQ--PSFRQYSGYLKGS--GSKHLHYWFVESQKDPENSPVV 96   

                   LWLNGGPGCSSlgYGlfeElGPFrvneyndggktLylNpYSWNkvANvLF
                   LWLNGGPGCSSl+ Gl++E+GPF+v+  +dg  tL++NpYSWN  ANvL+
     bm01140    97 LWLNGGPGCSSLD-GLLTEHGPFLVQ--PDG-VTLEYNPYSWNLIANVLY 142  

                   LDsPvGVGFSYsntssdlyttgDdetAkDnyeFLqkFFerFPeyknndFY
                   L+sP+GVGFSYs++++   +t+D+e+A+ n+e+Lq+FF  FPeyknn+++
     bm01140   143 LESPAGVGFSYSDDKFY--ATNDTEVAQSNFEALQDFFRLFPEYKNNKLF 190  

                   ItGESYAGhYVPqLaqeIldgnkkgekpniNLKGiaIGNGltdpatdyns
                   +tGESYAG+Y+P+La +++++         NL+G+a+GNGl +++++ ns
     bm01140   191 LTGESYAGIYIPTLAVLVMQDP------SMNLQGLAVGNGLSSYEQNDNS 234  

                   yvpmacfayyhglisdelyeslkkaCcgnyylsdldpsnteCyklveeas
                   +v    fayyhgl+   l+ sl+++Cc +++++++d+ + eC + ++e+ 
     bm01140   235 LVY---FAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNLQEVA 281  

                   gcvsnsesydvcnilnaaldengaagpyqtginpYnIytpccdnsslsal
                     v+ns                        g+n+Yn+y+pc     ++ +
     bm01140   282 RIVGNS------------------------GLNIYNLYAPCAGGVPSHFR 307  

                   ss.pkkrpqsgat.g.tkkllsrr.r.l.rkwiavswpstdtsggydpcd
                    ++++  +q++ + ++++ l++++++ l r+        ++  +++++ +
     bm01140   308 YEkDTVVVQDLGNiFtRLPLKRMWhQaLlRS-------GDKVRMDPPCTN 350  

                   esyaekYLNrpdVqkALHanvtkgsvyeWerCsdvvnnnfnwyyddsyks
                   +++a++YLN+p V+kAL+++     +++W +C++ v    n++y+  y+s
     bm01140   351 TTAASTYLNNPYVRKALNIP---EQLPQWDMCNFLV----NLQYRRLYRS 393  

                   mlpilkelleggynlRvLiYsGDtDmvcpflGtqawikklAaLnlsgkdp
                   m + + +ll++  ++ +L+Y+GD+Dm+c+f+G+++++++   Ln +   +
     bm01140   394 MNSQYLKLLSSQ-KYQILLYNGDVDMACNFMGDEWFVDS---LNQKMEVQ 439  

                   wrpWyvspwkvdgqvaGytkvYkggnnLtFaTVkGAGHmVPedqPeeALq
                   +rpW v+++++++q+aG++k++     ++F+T+kGAGHmVP+d+P +A++
     bm01140   440 RRPWLVKYGDSGEQIAGFVKEF-SH--IAFLTIKGAGHMVPTDKPLAAFT 486  

                   mfkrFlsg<-*
                   mf+rFl++   
     bm01140   487 MFSRFLNK    494  

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