hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-08271051/chunk_1/iprscan-20080807-08271051.nocrc
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Query sequence: bm01173
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00169.19.fs PH domain                                       30.2      1e-08   1
PF00169.19.ls PH domain                                       32.2    1.7e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00169.19.fs   1/1      26   132 ..     1    92 []    30.2    1e-08
PF00169.19.ls   1/1      26   132 ..     1    92 []    32.2  1.7e-06

Alignments of top-scoring domains:
PF00169.19.fs: domain 1 of 1, from 26 to 132: score 30.2, E = 1e-08
                   *->vikeGwLlkkg.gkkswkkRyfvLfd.dvLlyykdkk...kkpkgsi
                      +++ GwL+++++ +++wk+ +f L  +++L yy d++ ++++ +  i
     bm01173    26    LVRGGWLWRQSsILRRWKRNWFALWLdGTLGYYHDETaqdEEDRVLI 72   

                   pLsgiqvtkvpdn.........krkncFeirt.dretlllqaeseeerke
                     +   +++ p+ ++ ++++++ r+  + +  +++ +l+l+ae+++++  
     bm01173    73 HFNVRDIKIGPEChdvqppegrSRDGLLTVNLrEGGRLHLCAETKDDALA 122  

                   Wvkaiqsair<-*
                   W +a+ +a +   
     bm01173   123 WKTALLEANS    132  

PF00169.19.ls: domain 1 of 1, from 26 to 132: score 32.2, E = 1.7e-06
                   *->vikeGwLlkkg.gkkswkkRyfvLfd.dvLlyykdkk...kkpkgsi
                      +++ GwL+++++ +++wk+ +f L  +++L yy d++ ++++ +  i
     bm01173    26    LVRGGWLWRQSsILRRWKRNWFALWLdGTLGYYHDETaqdEEDRVLI 72   

                   pLsgiqvtkvpdn.........krkncFeirt.dretlllqaeseeerke
                     +   +++ p+ ++ ++++++ r+  + +  +++ +l+l+ae+++++  
     bm01173    73 HFNVRDIKIGPEChdvqppegrSRDGLLTVNLrEGGRLHLCAETKDDALA 122  

                   Wvkaiqsair<-*
                   W +a+ +a +   
     bm01173   123 WKTALLEANS    132  

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