hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-08271051/chunk_1/iprscan-20080807-08271051.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm01173
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00233                                                  34.9    1.1e-05   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1      26   134 ..     1    82 []    34.9  1.1e-05

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 26 to 134: score 34.9, E = 1.1e-05
                   *->vikeGwLlkks..k.swkkryfvLfn.gvLlyyksk.....kpkgsi
                      +++ GwL ++s+ +++wk+ +f L  +g+L yy++++ ++++ +  i
     bm01173    26    LVRGGWLWRQSsiLrRWKRNWFALWLdGTLGYYHDEtaqdeEDRVLI 72   

                   pLsgcsvre.p...............cFeivt.dr.tlllqAeseeeree
                   + +   ++ +p+ ++  +++++++++ +++  +++++l+l+Ae+++++  
     bm01173    73 HFNVRDIKIgPechdvqppegrsrdgLLTVNLrEGgRLHLCAETKDDALA 122  

                   Wvealqsaiaka<-*
                   W +al +a +     
     bm01173   123 WKTALLEANSTP    134  

//