hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-08322750/chunk_1/iprscan-20080807-08322750.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm01225 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05091.3.ls Eukaryotic translation initiation factor 3 1453.1 0 1 PF05091.3.fs Eukaryotic translation initiation factor 3 1451.2 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05091.3.fs 1/1 23 562 .. 1 608 [] 1451.2 0 PF05091.3.ls 1/1 23 562 .. 1 608 [] 1453.1 0 Alignments of top-scoring domains: PF05091.3.fs: domain 1 of 1, from 23 to 562: score 1451.2, E = 0 *->lakFelpevafNesGWGPcevpdvsssAsPtsvAAAnLfkDPVPYqp +akF++p++++N+sGWGPc+vp++ f+D +PYqp bm01225 23 MAKFMTPVIQDNPSGWGPCAVPEQ--------------FRD-MPYQP 54 FSKgDRLGKvADWtgaqpFYRRndkrReqrGrksdfaavfrnkvYasafG FSKgDRLGKvADWtga++ +dkr ++nk Y+s+fG bm01225 55 FSKGDRLGKVADWTGATY----QDKR-------------YTNK-YSSQFG 86 aGsqysYfHeeDEssFqLVDtarpqrtkpyqrngRfrplhnrrnlrqerd +Gsqy+YfHeeDEssFqLVDtar+q+t+ yqr +R+r +++rnlr+++d bm01225 87 GGSQYAYFHEEDESSFQLVDTARTQKTA-YQR-NRMR--FAQRNLRRDKD 132 rrgrgnqglNlrilsssakggakavkaekerarnaRqgqrGmGrRfGikd rr+++ ++Nl+il++s ak++++e++r+++++q+q+G+ r+++ bm01225 133 RRNML--QFNLQILPKS----AKQKERERIRLQKKFQKQFGV-RQKW--- 172 rgkeqklReSSVeVrpDWvvlEEmdFsrLsKLsLpnikeGvDiGDetCGs ++k+qk+R+SSVeVr+DW+v+EEmdF++L+K+++++++e++Di e+CG+ bm01225 173 DQKSQKPRDSSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDI--ECCGA 220 LeYYDKlfDRItvKNEkPLqrikdRvfytVTTTDDPVIRrLAketkGNVF LeYYDK+fDRIt+++EkPL++i +R+f+tVTTTDDPVIR+LAk t+GNVF bm01225 221 LEYYDKAFDRITTRSEKPLRSI-KRIFHTVTTTDDPVIRKLAK-TQGNVF 268 aTDaILAtLMCaTRSVYSWDIViqrvGdKLFFDKRdgsdfLnPvDlLTVn aTDaILAtLM++TRSVYSWDIV+qrvG+KLFFDKRd+sdf DlLTV+ bm01225 269 ATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDF----DLLTVS 314 ETSvEPPmdddnREsiNSarsLAvEAtYINqNFsqQVLrrgdeEPKykFe ET++EPP+d++n s+NS+r+LA+EAtYIN+NFsqQ+Lr+g+e +y+F+ bm01225 315 ETANEPPQDEGN--SFNSPRNLAMEATYINHNFSQQCLRMGKE--RYNFP 360 epNAPFvnededkeeiASvaYrYRkWdLgddvDeKPVkLvaRCElDGViq +pN PFv++d+dk+eiASvaYrYR+W+Lgdd+ +L++RCE+DGV++ bm01225 361 NPN-PFVEDDMDKNEIASVAYRYRRWKLGDDI-----DLIVRCEHDGVMT 404 gpnnevqFltIKALNEwDSKfsNvtGgVDWRqKLDtQRGAVlATELKNNs g+n+ev+F++IK+LNEwDS+++N gVDWRqKLD+QRGAV+ATELKNNs bm01225 405 GANGEVSFINIKTLNEWDSRHCN---GVDWRQKLDSQRGAVIATELKNNS 451 cKLAkWTvqALLAGSDqlKLGYVSRvNpRDhqrHvILgtqqfKPkEFAsQ +KLA+WT++ALLAGS++lKLGYVSR++++D++rHvILgtqqfKP+EFAsQ bm01225 452 YKLARWTCCALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQ 501 INLnmdNaWGILRciiDlCMKlkdGKYLLmKDPnkPviRLYsvPpnTFes INL+++NaWGILRc+iD+CMKl++GKYL++KDPnk+viR+Ys+P++TF+s bm01225 502 INLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRVYSLPDGTFSS 551 dedeeeEeede<-* dedeeeEee+e bm01225 552 DEDEEEEEEEE 562 PF05091.3.ls: domain 1 of 1, from 23 to 562: score 1453.1, E = 0 *->lakFelpevafNesGWGPcevpdvsssAsPtsvAAAnLfkDPVPYqp +akF++p++++N+sGWGPc+vp++ f+D +PYqp bm01225 23 MAKFMTPVIQDNPSGWGPCAVPEQ--------------FRD-MPYQP 54 FSKgDRLGKvADWtgaqpFYRRndkrReqrGrksdfaavfrnkvYasafG FSKgDRLGKvADWtga++ +dkr ++nk Y+s+fG bm01225 55 FSKGDRLGKVADWTGATY----QDKR-------------YTNK-YSSQFG 86 aGsqysYfHeeDEssFqLVDtarpqrtkpyqrngRfrplhnrrnlrqerd +Gsqy+YfHeeDEssFqLVDtar+q+t+ yqr +R+r +++rnlr+++d bm01225 87 GGSQYAYFHEEDESSFQLVDTARTQKTA-YQR-NRMR--FAQRNLRRDKD 132 rrgrgnqglNlrilsssakggakavkaekerarnaRqgqrGmGrRfGikd rr+++ ++Nl+il++s ak++++e++r+++++q+q+G+ r+++ bm01225 133 RRNML--QFNLQILPKS----AKQKERERIRLQKKFQKQFGV-RQKW--- 172 rgkeqklReSSVeVrpDWvvlEEmdFsrLsKLsLpnikeGvDiGDetCGs ++k+qk+R+SSVeVr+DW+v+EEmdF++L+K+++++++e++Di e+CG+ bm01225 173 DQKSQKPRDSSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDI--ECCGA 220 LeYYDKlfDRItvKNEkPLqrikdRvfytVTTTDDPVIRrLAketkGNVF LeYYDK+fDRIt+++EkPL++i +R+f+tVTTTDDPVIR+LAk t+GNVF bm01225 221 LEYYDKAFDRITTRSEKPLRSI-KRIFHTVTTTDDPVIRKLAK-TQGNVF 268 aTDaILAtLMCaTRSVYSWDIViqrvGdKLFFDKRdgsdfLnPvDlLTVn aTDaILAtLM++TRSVYSWDIV+qrvG+KLFFDKRd+sdf DlLTV+ bm01225 269 ATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDF----DLLTVS 314 ETSvEPPmdddnREsiNSarsLAvEAtYINqNFsqQVLrrgdeEPKykFe ET++EPP+d++n s+NS+r+LA+EAtYIN+NFsqQ+Lr+g+e +y+F+ bm01225 315 ETANEPPQDEGN--SFNSPRNLAMEATYINHNFSQQCLRMGKE--RYNFP 360 epNAPFvnededkeeiASvaYrYRkWdLgddvDeKPVkLvaRCElDGViq +pN PFv++d+dk+eiASvaYrYR+W+Lgdd+ +L++RCE+DGV++ bm01225 361 NPN-PFVEDDMDKNEIASVAYRYRRWKLGDDI-----DLIVRCEHDGVMT 404 gpnnevqFltIKALNEwDSKfsNvtGgVDWRqKLDtQRGAVlATELKNNs g+n+ev+F++IK+LNEwDS+++N gVDWRqKLD+QRGAV+ATELKNNs bm01225 405 GANGEVSFINIKTLNEWDSRHCN---GVDWRQKLDSQRGAVIATELKNNS 451 cKLAkWTvqALLAGSDqlKLGYVSRvNpRDhqrHvILgtqqfKPkEFAsQ +KLA+WT++ALLAGS++lKLGYVSR++++D++rHvILgtqqfKP+EFAsQ bm01225 452 YKLARWTCCALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQ 501 INLnmdNaWGILRciiDlCMKlkdGKYLLmKDPnkPviRLYsvPpnTFes INL+++NaWGILRc+iD+CMKl++GKYL++KDPnk+viR+Ys+P++TF+s bm01225 502 INLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRVYSLPDGTFSS 551 dedeeeEeede<-* dedeeeEee+e bm01225 552 DEDEEEEEEEE 562 //