hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-08433246/chunk_1/iprscan-20080807-08433246.nocrc
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Query sequence: bm01247
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00335                                                 370.3   1.2e-106   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00335    1/4     222   274 ..     1    53 []    88.5    8e-22
SM00335    2/4     294   346 ..     1    53 []   101.3  1.2e-25
SM00335    3/4     378   430 ..     1    53 []    83.2  3.1e-20
SM00335    4/4     453   505 ..     1    53 []    97.3  1.8e-24

Alignments of top-scoring domains:
SM00335: domain 1 of 4, from 222 to 274: score 88.5, E = 8e-22
                   *->GTDEktlIeILasRsnaqlqaIkqaYkklygkdLeddIksetSGdfe
                      GTDE+++I+ L s sn q+q+I   +k++ygkdL++d+kse+SG+fe
     bm01247   222    GTDEQAIIDCLGSCSNKQRQQILLSFKTAYGKDLIKDLKSELSGNFE 268  

                   klLlaL<-*
                   k +laL   
     bm01247   269 KTILAL    274  

SM00335: domain 2 of 4, from 294 to 346: score 101.3, E = 1.2e-25
                   *->GTDEktlIeILasRsnaqlqaIkqaYkklygkdLeddIksetSGdfe
                      GTDE++lIeILasRsn+++++ ++aYk++++k+Le++I+s+tSG+f+
     bm01247   294    GTDEACLIEILASRSNEHIRELNRAYKAEFKKTLEEAIRSDTSGHFQ 340  

                   klLlaL<-*
                   +lL++L   
     bm01247   341 RLLISL    346  

SM00335: domain 3 of 4, from 378 to 430: score 83.2, E = 3.1e-20
                   *->GTDEktlIeILasRsnaqlqaIkqaYkklygkdLeddIksetSGdfe
                      GTDE++++ +L+sRs a+l a++ +Y+++ g+d+e++I++e SGd+e
     bm01247   378    GTDESKFNAVLCSRSRAHLVAVFNEYQRMTGRDIEKSICREMSGDLE 424  

                   klLlaL<-*
                   +++la+   
     bm01247   425 EGMLAV    430  

SM00335: domain 4 of 4, from 453 to 505: score 97.3, E = 1.8e-24
                   *->GTDEktlIeILasRsnaqlqaIkqaYkklygkdLeddIksetSGdfe
                      GT++ tlI+I++sRs+ +l++I+ +Yk++ygk+L++dI ++tSGd++
     bm01247   453    GTKDRTLIRIMVSRSETDLLDIRSEYKRMYGKSLYHDISGDTSGDYR 499  

                   klLlaL<-*
                   k+Ll +   
     bm01247   500 KILLKI    505  

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