# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm01286.fasta.nr -Q bm01286.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm01286, 349 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6824180 sequences Expectation_n fit: rho(ln(x))= 4.9585+/-0.000186; mu= 11.0728+/- 0.010 mean_var=72.9784+/-14.092, 0's: 33 Z-trim: 35 B-trim: 53 in 1/66 Lambda= 0.150133 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|168278419|dbj|BAG11089.1| ubiquitin interaction ( 343) 2264 499.4 3.8e-139 gi|6523831|gb|AAF14875.1|AF113538_1 retinoid x rec ( 349) 2242 494.6 1e-137 gi|12584845|gb|AAG59855.1|AF284753_1 X2HRIP110 [Ho ( 349) 2220 489.9 2.8e-136 gi|114603579|ref|XP_001137523.1| PREDICTED: simila ( 351) 2164 477.8 1.3e-132 gi|119605447|gb|EAW85041.1| receptor associated pr ( 438) 2039 450.8 2.1e-124 gi|21619703|gb|AAH32561.1| UIMC1 protein [Homo sap ( 553) 2037 450.4 3.4e-124 gi|119605448|gb|EAW85042.1| receptor associated pr ( 596) 2032 449.4 7.6e-124 gi|12584837|gb|AAG59851.1|AF284749_1 XHRIP110 [Hom ( 641) 2032 449.4 8e-124 gi|60390957|sp|Q96RL1|UIMC1_HUMAN Ubiquitin intera ( 719) 2032 449.4 8.7e-124 gi|193785718|dbj|BAG51153.1| unnamed protein produ ( 719) 2026 448.1 2.2e-123 gi|14388967|gb|AAK61871.1|AF349313_1 nuclear zinc ( 719) 2023 447.5 3.4e-123 gi|114603575|ref|XP_001137687.1| PREDICTED: retino ( 555) 1970 435.9 7.9e-120 gi|114603577|ref|XP_001137356.1| PREDICTED: simila ( 352) 1963 434.2 1.6e-119 gi|114603565|ref|XP_001138030.1| PREDICTED: hypoth ( 721) 1960 433.8 4.3e-119 gi|109079887|ref|XP_001093769.1| PREDICTED: simila ( 684) 1922 425.6 1.3e-116 gi|119605452|gb|EAW85046.1| receptor associated pr ( 286) 1840 407.5 1.5e-111 gi|114603581|ref|XP_001137601.1| PREDICTED: simila ( 288) 1778 394.1 1.6e-107 gi|73954002|ref|XP_854038.1| PREDICTED: similar to ( 894) 1653 367.4 5.3e-99 gi|160358929|sp|A0P8Z5.1|UIMC1_PIG Ubiquitin inter ( 721) 1581 351.7 2.2e-94 gi|149726053|ref|XP_001502568.1| PREDICTED: simila ( 722) 1566 348.5 2.1e-93 gi|83405424|gb|AAI11356.1| Ubiquitin interaction m ( 347) 1484 330.5 2.7e-88 gi|164414417|ref|NP_001033150.2| ubiquitin interac ( 355) 1483 330.3 3.2e-88 gi|164414423|ref|NP_001106693.1| ubiquitin interac ( 724) 1478 329.4 1.2e-87 gi|6807904|emb|CAB70716.1| hypothetical protein [H ( 214) 1284 287.0 2.1e-75 gi|67969096|dbj|BAE00903.1| unnamed protein produc ( 574) 1147 257.7 3.7e-66 gi|74144508|dbj|BAE36094.1| unnamed protein produc ( 446) 1064 239.6 8e-61 gi|148709221|gb|EDL41167.1| retinoid X receptor in ( 727) 1063 239.6 1.3e-60 gi|26350471|dbj|BAC38875.1| unnamed protein produc ( 727) 1057 238.3 3.3e-60 gi|26342899|dbj|BAC35106.1| unnamed protein produc ( 727) 1057 238.3 3.3e-60 gi|60390868|sp|Q5U5Q9|UIMC1_MOUSE Ubiquitin intera ( 727) 1054 237.6 5.2e-60 gi|709961|gb|AAC52167.1| retinoid X receptor inter ( 580) 1052 237.1 5.9e-60 gi|56270161|gb|AAH87149.1| Ubiquitin interaction m ( 726) 943 213.6 8.9e-53 gi|118097386|ref|XP_414476.2| PREDICTED: similar t ( 667) 322 79.0 2.6e-12 >>gi|168278419|dbj|BAG11089.1| ubiquitin interaction mot (343 aa) initn: 2264 init1: 2264 opt: 2264 Z-score: 2653.4 bits: 499.4 E(): 3.8e-139 Smith-Waterman score: 2264; 100.000% identity (100.000% similar) in 343 aa overlap (7-349:1-343) 10 20 30 40 50 60 bm0128 IVAGLLMLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAA :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAA 10 20 30 40 50 70 80 90 100 110 120 bm0128 LTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 LTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGN 60 70 80 90 100 110 130 140 150 160 170 180 bm0128 KEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 KEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTK 120 130 140 150 160 170 190 200 210 220 230 240 bm0128 SDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKAEGSGRACSTVEGKWQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 SDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKAEGSGRACSTVEGKWQQ 180 190 200 210 220 230 250 260 270 280 290 300 bm0128 RLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQSSFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 RLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQSSFT 240 250 260 270 280 290 310 320 330 340 bm0128 RRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF ::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 RRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF 300 310 320 330 340 >>gi|6523831|gb|AAF14875.1|AF113538_1 retinoid x recepto (349 aa) initn: 2252 init1: 1437 opt: 2242 Z-score: 2627.5 bits: 494.6 E(): 1e-137 Smith-Waterman score: 2242; 98.281% identity (98.281% similar) in 349 aa overlap (7-349:1-349) 10 20 30 40 50 60 bm0128 IVAGLLMLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAA :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|652 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAA 10 20 30 40 50 70 80 90 100 110 120 bm0128 LTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|652 LTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGN 60 70 80 90 100 110 130 140 150 160 170 180 bm0128 KEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|652 KEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTK 120 130 140 150 160 170 190 200 210 220 230 bm0128 SDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSGRACSTV :::::::::::::::::::::::::::::::::::::::::::: :::::::::: gi|652 SDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSGRACSTV 180 190 200 210 220 230 240 250 260 270 280 290 bm0128 EGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|652 EGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSRE 240 250 260 270 280 290 300 310 320 330 340 bm0128 MQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|652 MQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF 300 310 320 330 340 >>gi|12584845|gb|AAG59855.1|AF284753_1 X2HRIP110 [Homo s (349 aa) initn: 2230 init1: 1437 opt: 2220 Z-score: 2601.8 bits: 489.9 E(): 2.8e-136 Smith-Waterman score: 2220; 97.708% identity (97.994% similar) in 349 aa overlap (7-349:1-349) 10 20 30 40 50 60 bm0128 IVAGLLMLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAA :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|125 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAA 10 20 30 40 50 70 80 90 100 110 120 bm0128 LTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|125 LTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGN 60 70 80 90 100 110 130 140 150 160 170 180 bm0128 KEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|125 KEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTK 120 130 140 150 160 170 190 200 210 220 230 bm0128 SDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSGRACSTV :::::::::::::::::::::::::::::::::::::::::::: :::::::::: gi|125 SDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSGRACSTV 180 190 200 210 220 230 240 250 260 270 280 290 bm0128 EGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSRE :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: gi|125 EGKWQQRLKNPKEKGHSEGRLLSFLEQSERKTSDADIKSSETGAFRVPSPGMEEAGCSRE 240 250 260 270 280 290 300 310 320 330 340 bm0128 MQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF ::::::::::::::::::::::::::::: ::::::::::::::::::::::::: gi|125 MQSSFTRRDLNESPVKSFVSISEATDCLVVFKKQVTVQPGSRTRTKAGRGRRRKF 300 310 320 330 340 >>gi|114603579|ref|XP_001137523.1| PREDICTED: similar to (351 aa) initn: 2206 init1: 1105 opt: 2164 Z-score: 2536.2 bits: 477.8 E(): 1.3e-132 Smith-Waterman score: 2164; 95.442% identity (96.581% similar) in 351 aa overlap (7-349:1-351) 10 20 30 40 50 60 bm0128 IVAGLLMLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAA :::::::::::::::::: ::::::::::::::::::::::::::::::::::: gi|114 MLPLPDLDLWPLDRLPSPTKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAA 10 20 30 40 50 70 80 90 100 110 120 bm0128 LTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGN :::: :::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|114 LTSKGSLVLMPESSTEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGN 60 70 80 90 100 110 130 140 150 160 170 bm0128 KEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAK-- :::::::.:::::::::::::::::: ::::::::::::::::::::::::::::::: gi|114 KEDAEKEIAISTFSSSNQVSCPLCDQHFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKAK 120 130 140 150 160 170 180 190 200 210 220 230 bm0128 TKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSGRACS :::::::::::::::::::::::::::::::::::::::::::::: ::.::: : gi|114 TKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGGGRAFS 180 190 200 210 220 230 240 250 260 270 280 290 bm0128 TVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCS 240 250 260 270 280 290 300 310 320 330 340 bm0128 REMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF :::::::::::::::::::::::::::::::::::::::.::::::::::::::::: gi|114 REMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVHPGSRTRTKAGRGRRRKF 300 310 320 330 340 350 >>gi|119605447|gb|EAW85041.1| receptor associated protei (438 aa) initn: 2049 init1: 1234 opt: 2039 Z-score: 2388.6 bits: 450.8 E(): 2.1e-124 Smith-Waterman score: 2039; 97.826% identity (98.137% similar) in 322 aa overlap (34-349:117-438) 10 20 30 40 50 60 bm0128 GLLMLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTS ::.::::::::::::::::::::::::::: gi|119 LALKMSEQEAREVNSQEEEEEELLRKAIAESLNSSQGIVEETSEEGNSVPASQSVAALTS 90 100 110 120 130 140 70 80 90 100 110 120 bm0128 KRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKED 150 160 170 180 190 200 130 140 150 160 170 180 bm0128 AEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDS 210 220 230 240 250 260 190 200 210 220 230 bm0128 GTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSGRACSTVEGK ::::::::::::::::::::::::::::::::::::::::: ::::::::::::: gi|119 GTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSGRACSTVEGK 270 280 290 300 310 320 240 250 260 270 280 290 bm0128 WQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 WQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQS 330 340 350 360 370 380 300 310 320 330 340 bm0128 SFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF 390 400 410 420 430 >>gi|21619703|gb|AAH32561.1| UIMC1 protein [Homo sapiens (553 aa) initn: 2039 init1: 1224 opt: 2037 Z-score: 2384.9 bits: 450.4 E(): 3.4e-124 Smith-Waterman score: 2037; 92.151% identity (95.058% similar) in 344 aa overlap (12-349:211-553) 10 20 30 40 bm0128 IVAGLLMLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGI .... .:: . .. : :. .::::: gi|216 EPWDHTEKTEEEPVSGSSGSWDQSSQPVFENVNVKSFDRCTGHSAEHTQC-GKPQSSQGI 190 200 210 220 230 50 60 70 80 90 100 bm0128 VEETSEEGNSVPASQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 VEETSEEGNSVPASQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPG 240 250 260 270 280 290 110 120 130 140 150 160 bm0128 SRDILDGVRIIMADKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 SRDILDGVRIIMADKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCN 300 310 320 330 340 350 170 180 190 200 210 220 bm0128 GLMEEDTVLTRRQKEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 GLMEEDTVLTRRQKEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQL 360 370 380 390 400 410 230 240 250 260 270 bm0128 AKA------EGSGRACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSE ::: ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 AKADQGDGPEGSGRACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSE 420 430 440 450 460 470 280 290 300 310 320 330 bm0128 TGAFRVPSPGMEEAGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 TGAFRVPSPGMEEAGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGS 480 490 500 510 520 530 340 bm0128 RTRTKAGRGRRRKF :::::::::::::: gi|216 RTRTKAGRGRRRKF 540 550 >>gi|119605448|gb|EAW85042.1| receptor associated protei (596 aa) initn: 2239 init1: 1224 opt: 2032 Z-score: 2378.6 bits: 449.4 E(): 7.6e-124 Smith-Waterman score: 2032; 95.166% identity (96.979% similar) in 331 aa overlap (25-349:267-596) 10 20 30 40 50 bm0128 IVAGLLMLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPA ....: : . .:::::::::::::::::: gi|119 ERQESRASDWHSKTKDFQESSIKSLKEKLLLEEEPTTSHG-QSSQGIVEETSEEGNSVPA 240 250 260 270 280 290 60 70 80 90 100 110 bm0128 SQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMA 300 310 320 330 340 350 120 130 140 150 160 170 bm0128 DKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQ 360 370 380 390 400 410 180 190 200 210 220 bm0128 KEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSG :::::::::::::::::::::::::::::::::::::::::::::::::: :::: gi|119 KEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSG 420 430 440 450 460 470 230 240 250 260 270 280 bm0128 RACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEE 480 490 500 510 520 530 290 300 310 320 330 340 bm0128 AGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRK 540 550 560 570 580 590 bm0128 F : gi|119 F >>gi|12584837|gb|AAG59851.1|AF284749_1 XHRIP110 [Homo sa (641 aa) initn: 2039 init1: 1224 opt: 2032 Z-score: 2378.2 bits: 449.4 E(): 8e-124 Smith-Waterman score: 2032; 95.166% identity (96.979% similar) in 331 aa overlap (25-349:312-641) 10 20 30 40 50 bm0128 IVAGLLMLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPA ....: : . .:::::::::::::::::: gi|125 ERQESRASDWHSKTKDFQESSIKSLKEKLLLEEEPTTSHG-QSSQGIVEETSEEGNSVPA 290 300 310 320 330 340 60 70 80 90 100 110 bm0128 SQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|125 SQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMA 350 360 370 380 390 400 120 130 140 150 160 170 bm0128 DKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|125 DKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQ 410 420 430 440 450 460 180 190 200 210 220 bm0128 KEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSG :::::::::::::::::::::::::::::::::::::::::::::::::: :::: gi|125 KEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSG 470 480 490 500 510 520 230 240 250 260 270 280 bm0128 RACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|125 RACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEE 530 540 550 560 570 580 290 300 310 320 330 340 bm0128 AGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|125 AGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRK 590 600 610 620 630 640 bm0128 F : gi|125 F >>gi|60390957|sp|Q96RL1|UIMC1_HUMAN Ubiquitin interactio (719 aa) initn: 2039 init1: 1224 opt: 2032 Z-score: 2377.5 bits: 449.4 E(): 8.7e-124 Smith-Waterman score: 2032; 95.166% identity (96.979% similar) in 331 aa overlap (25-349:390-719) 10 20 30 40 50 bm0128 IVAGLLMLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPA ....: : . .:::::::::::::::::: gi|603 ERQESRASDWHSKTKDFQESSIKSLKEKLLLEEEPTTSHG-QSSQGIVEETSEEGNSVPA 360 370 380 390 400 410 60 70 80 90 100 110 bm0128 SQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|603 SQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMA 420 430 440 450 460 470 120 130 140 150 160 170 bm0128 DKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|603 DKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQ 480 490 500 510 520 530 180 190 200 210 220 bm0128 KEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSG :::::::::::::::::::::::::::::::::::::::::::::::::: :::: gi|603 KEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSG 540 550 560 570 580 590 230 240 250 260 270 280 bm0128 RACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|603 RACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEE 600 610 620 630 640 650 290 300 310 320 330 340 bm0128 AGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|603 AGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRK 660 670 680 690 700 710 bm0128 F : gi|603 F >>gi|193785718|dbj|BAG51153.1| unnamed protein product [ (719 aa) initn: 2033 init1: 1224 opt: 2026 Z-score: 2370.5 bits: 448.1 E(): 2.2e-123 Smith-Waterman score: 2026; 94.864% identity (96.979% similar) in 331 aa overlap (25-349:390-719) 10 20 30 40 50 bm0128 IVAGLLMLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPA ....: : . .:::::::::::::::::: gi|193 ERQESRASDWHSKTKDFQESSIKSLKEKLLLEEEPTTSHG-QSSQGIVEETSEEGNSVPA 360 370 380 390 400 410 60 70 80 90 100 110 bm0128 SQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|193 SQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMA 420 430 440 450 460 470 120 130 140 150 160 170 bm0128 DKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|193 DKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQ 480 490 500 510 520 530 180 190 200 210 220 bm0128 KEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSG :::::::::::::::::::::::::::::::::::::::::::::::::: :::: gi|193 KEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSG 540 550 560 570 580 590 230 240 250 260 270 280 bm0128 RACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEE :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|193 RACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSNADIKSSETGAFRVPSPGMEE 600 610 620 630 640 650 290 300 310 320 330 340 bm0128 AGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|193 AGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRK 660 670 680 690 700 710 bm0128 F : gi|193 F 349 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 08:46:43 2008 done: Thu Aug 7 08:49:13 2008 Total Scan time: 770.920 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]