hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-09005864/chunk_1/iprscan-20080807-09005864.nocrc
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Query sequence: bm01294
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         137.5    3.5e-38   5
PF00096.16.fs Zinc finger, C2H2 type                         127.5    3.3e-35   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls   1/5      61    86 ..     1    24 []    24.0  0.00049
PF00096.16.ls   2/5      92   116 ..     1    24 []    29.9  8.3e-06
PF00096.16.fs   2/5      92   116 ..     1    24 []    27.9  1.1e-05
PF00096.16.ls   3/5     122   144 ..     1    24 []    31.3  3.1e-06
PF00096.16.fs   3/5     122   144 ..     1    24 []    29.3  4.6e-06
PF00096.16.fs   4/5     150   172 ..     1    24 []    25.4  4.3e-05
PF00096.16.ls   4/5     150   172 ..     1    24 []    27.4  4.7e-05
PF00096.16.fs   5/5     181   204 ..     1    24 []    22.9  0.00019
PF00096.16.ls   5/5     181   204 ..     1    24 []    24.8  0.00028

Alignments of top-scoring domains:
PF00096.16.ls: domain 1 of 5, from 61 to 86: score 24.0, E = 0.00049
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                        C+f++Cg+ Fs++  L++H++ +H   
     bm01294    61    MPCDFpGCGRIFSNRQYLNHHKKYqH    86   

PF00096.16.ls: domain 2 of 5, from 92 to 116: score 29.9, E = 8.3e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++Cp + CgksF+ k++Lk H++ H   
     bm01294    92    FSCPEpACGKSFNFKKHLKEHMKLH    116  

PF00096.16.fs: domain 2 of 5, from 92 to 116: score 27.9, E = 1.1e-05
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++Cp + CgksF+ k++Lk H++ H   
     bm01294    92    FSCPEpACGKSFNFKKHLKEHMKLH    116  

PF00096.16.ls: domain 3 of 5, from 122 to 144: score 31.3, E = 3.1e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+  C +sF+++snL  H+r+H   
     bm01294   122    YICE-FCARSFRTSSNLVIHRRIH    144  

PF00096.16.fs: domain 3 of 5, from 122 to 144: score 29.3, E = 4.6e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+  C +sF+++snL  H+r+H   
     bm01294   122    YICE-FCARSFRTSSNLVIHRRIH    144  

PF00096.16.fs: domain 4 of 5, from 150 to 172: score 25.4, E = 4.3e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C+ +Cg ++++k++L+ H+r+H   
     bm01294   150    LQCE-ICGFTCRQKASLNWHQRKH    172  

PF00096.16.ls: domain 4 of 5, from 150 to 172: score 27.4, E = 4.7e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C+ +Cg ++++k++L+ H+r+H   
     bm01294   150    LQCE-ICGFTCRQKASLNWHQRKH    172  

PF00096.16.fs: domain 5 of 5, from 181 to 204: score 22.9, E = 0.00019
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      + C+  Cgk+F  +++  +H+ ++H   
     bm01294   181    FPCE-FCGKRFEKPDSVAAHRSKsH    204  

PF00096.16.ls: domain 5 of 5, from 181 to 204: score 24.8, E = 0.00028
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      + C+  Cgk+F  +++  +H+ ++H   
     bm01294   181    FPCE-FCGKRFEKPDSVAAHRSKsH    204  

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