hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-09005864/chunk_1/iprscan-20080807-09005864.nocrc
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Query sequence: bm01294
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 129.0      5e-34   5

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/5      61    86 ..     1    23 []    22.8    0.047
SM00355      2/5      92   116 ..     1    23 []    28.5   0.0009
SM00355      3/5     122   144 ..     1    23 []    27.4   0.0019
SM00355      4/5     150   172 ..     1    23 []    28.1   0.0012
SM00355      5/5     181   204 ..     1    23 []    22.1    0.076

Alignments of top-scoring domains:
SM00355: domain 1 of 5, from 61 to 86: score 22.8, E = 0.047
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                        C+++gCg+ fs+++ L++H + +H   
     bm01294    61    MPCDFpGCGRIFSNRqYLNHHKKyQH    86   

SM00355: domain 2 of 5, from 92 to 116: score 28.5, E = 0.0009
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      + Cp++ Cgksf+ k++Lk+Hm+ H   
     bm01294    92    FSCPEpACGKSFNFKkHLKEHMKLH    116  

SM00355: domain 3 of 5, from 122 to 144: score 27.4, E = 0.0019
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ C +sf++ ++L+ H r+H   
     bm01294   122    YICEF-CARSFRTSsNLVIHRRIH    144  

SM00355: domain 4 of 5, from 150 to 172: score 28.1, E = 0.0012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C+i Cg+++++k +L+ H+r+H   
     bm01294   150    LQCEI-CGFTCRQKaSLNWHQRKH    172  

SM00355: domain 5 of 5, from 181 to 204: score 22.1, E = 0.076
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + C++ Cgk+f  +++   H  ++H   
     bm01294   181    FPCEF-CGKRFEKPdSVAAHRSkSH    204  

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