hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-09065924/chunk_1/iprscan-20080807-09065924.nocrc
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Query sequence: bm01306
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00956.9.ls Nucleosome assembly protein (NAP)              640.1   1.7e-189   1
PF00956.9.fs Nucleosome assembly protein (NAP)              638.2   6.3e-189   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00956.9.fs   1/1      98   371 ..     1   293 []   638.2 6.3e-189
PF00956.9.ls   1/1      98   371 ..     1   293 []   640.1 1.7e-189

Alignments of top-scoring domains:
PF00956.9.fs: domain 1 of 1, from 98 to 371: score 638.2, E = 6.3e-189
                   *->keRieaLKnlQvehdelEakFyeEvlkLEqKYaklYqPlfeKRreII
                      k+R++aLKnlQv+++++EakFyeEv++LE+KYa+lYqPlf+KR+eII
     bm01306    98    KRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEII 144  

                   nGvvEPteeeiewkseeeesleEeeelvdEDgelaeeekakeaveeek.e
                   n+ +EPteee+ewk++      Ee+e       ++ee+k+k+++e+ek++
     bm01306   145 NAIYEPTEEECEWKPD------EEDE-------ISEELKEKAKIEDEKkD 181  

                   eeeEdpKGIPnFWLTalkNvdlvsemitEeDEpiLkyLkDIkvkesedGe
                   ee+EdpKGIP+FWLT++kNvdl+s+m++E+DEpiLk+LkDIkvk+s++G+
     bm01306   182 EEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQ 231  

                   psGFkLeFhFDsaNpYFtNkVLTKtYhlkseldpsDPfsFegpeiekaeG
                   p++F+LeFhF++ N+YFtN+VLTKtY+++se+d+sDPfsF+gpei++++G
     bm01306   232 PMSFVLEFHFEP-NEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTG 280  

                   ceIdWkkgKnNlTvktikKKQkhKgrgtvRtitktvpndSFFNFFsPpkv
                   c+IdWkkgKn +T+ktikKKQkhKgrgtvRt+tktv+ndSFFNFF Pp+v
     bm01306   281 CQIDWKKGKN-VTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEV 329  

                   pdEdeDqeeeldEDleelLelDyeIGeviRDrIIPrAVlyFtgeaie<-*
                   p+   +++  ld+D+e++L++D+eIG+++R+rIIPr+VlyFtgeaie   
     bm01306   330 PE---SGD--LDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIE    371  

PF00956.9.ls: domain 1 of 1, from 98 to 371: score 640.1, E = 1.7e-189
                   *->keRieaLKnlQvehdelEakFyeEvlkLEqKYaklYqPlfeKRreII
                      k+R++aLKnlQv+++++EakFyeEv++LE+KYa+lYqPlf+KR+eII
     bm01306    98    KRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEII 144  

                   nGvvEPteeeiewkseeeesleEeeelvdEDgelaeeekakeaveeek.e
                   n+ +EPteee+ewk++      Ee+e       ++ee+k+k+++e+ek++
     bm01306   145 NAIYEPTEEECEWKPD------EEDE-------ISEELKEKAKIEDEKkD 181  

                   eeeEdpKGIPnFWLTalkNvdlvsemitEeDEpiLkyLkDIkvkesedGe
                   ee+EdpKGIP+FWLT++kNvdl+s+m++E+DEpiLk+LkDIkvk+s++G+
     bm01306   182 EEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQ 231  

                   psGFkLeFhFDsaNpYFtNkVLTKtYhlkseldpsDPfsFegpeiekaeG
                   p++F+LeFhF++ N+YFtN+VLTKtY+++se+d+sDPfsF+gpei++++G
     bm01306   232 PMSFVLEFHFEP-NEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTG 280  

                   ceIdWkkgKnNlTvktikKKQkhKgrgtvRtitktvpndSFFNFFsPpkv
                   c+IdWkkgKn +T+ktikKKQkhKgrgtvRt+tktv+ndSFFNFF Pp+v
     bm01306   281 CQIDWKKGKN-VTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEV 329  

                   pdEdeDqeeeldEDleelLelDyeIGeviRDrIIPrAVlyFtgeaie<-*
                   p+   +++  ld+D+e++L++D+eIG+++R+rIIPr+VlyFtgeaie   
     bm01306   330 PE---SGD--LDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIE    371  

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