hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-20480081/chunk_1/iprscan-20090617-20480081.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm01318
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01454.9.ls MAGE family                                    337.5    2.1e-98   1
PF01454.9.fs MAGE family                                    335.7    7.2e-98   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01454.9.fs   1/1     287   457 ..     1   219 []   335.7  7.2e-98
PF01454.9.ls   1/1     287   457 ..     1   219 []   337.5  2.1e-98

Alignments of top-scoring domains:
PF01454.9.fs: domain 1 of 1, from 287 to 457: score 335.7, E = 7.2e-98
                   *->LVrflLskyqsKespItraeilkiVikeyknhFLpeIfkrAserLel
                      LV++lL+k+q K+ pI+r+++lk++ikey++ + peI++rA + Le+
     bm01318   287    LVKYLLAKDQTKI-PIKRSDMLKDIIKEYTDVY-PEIIERAGYSLEK 331  

                   vFGleLkEvdpkrrskkatsqsqsssgshsYILvskLplsyrivlflwqs
                   vFG++LkE+d++                h YIL+s+L+++          
     bm01318   332 VFGIQLKEIDKN---------------DHLYILLSTLEPTD--------- 357  

                   sykdgselgddeglPktsesstdtdqlavktGLLmviLgvIfmnGncasE
                       g+ lg++++ P              k+GLLmv+L++IfmnGn+ sE
     bm01318   358 ---AGI-LGTTKDSP--------------KLGLLMVLLSIIFMNGNRSSE 389  

                   eeLwefLnrlGlydgeehfifGldprkLitedlVkqkYLveyrqvpnsdP
                   +++we+L++lGl++g +h++fG d++kLit ++VkqkYL  y++vpns+P
     bm01318   390 AVIWEVLRKLGLRPGIHHSLFG-DVKKLITDEFVKQKYL-DYARVPNSNP 437  

                   peyeFlWslGpRAyaEtskmkV<-*
                   peyeF+W  G R+y EtskmkV   
     bm01318   438 PEYEFFW--GLRSYYETSKMKV    457  

PF01454.9.ls: domain 1 of 1, from 287 to 457: score 337.5, E = 2.1e-98
                   *->LVrflLskyqsKespItraeilkiVikeyknhFLpeIfkrAserLel
                      LV++lL+k+q K+ pI+r+++lk++ikey++ + peI++rA + Le+
     bm01318   287    LVKYLLAKDQTKI-PIKRSDMLKDIIKEYTDVY-PEIIERAGYSLEK 331  

                   vFGleLkEvdpkrrskkatsqsqsssgshsYILvskLplsyrivlflwqs
                   vFG++LkE+d++                h YIL+s+L+++          
     bm01318   332 VFGIQLKEIDKN---------------DHLYILLSTLEPTD--------- 357  

                   sykdgselgddeglPktsesstdtdqlavktGLLmviLgvIfmnGncasE
                       g+ lg++++ P              k+GLLmv+L++IfmnGn+ sE
     bm01318   358 ---AGI-LGTTKDSP--------------KLGLLMVLLSIIFMNGNRSSE 389  

                   eeLwefLnrlGlydgeehfifGldprkLitedlVkqkYLveyrqvpnsdP
                   +++we+L++lGl++g +h++fG d++kLit ++VkqkYL  y++vpns+P
     bm01318   390 AVIWEVLRKLGLRPGIHHSLFG-DVKKLITDEFVKQKYL-DYARVPNSNP 437  

                   peyeFlWslGpRAyaEtskmkV<-*
                   peyeF+W  G R+y EtskmkV   
     bm01318   438 PEYEFFW--GLRSYYETSKMKV    457  

//