hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-09173693/chunk_1/iprscan-20080807-09173693.nocrc
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Query sequence: bm01376
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00569.8.fs Zinc finger, ZZ type                            44.4    1.6e-11   1
PF00569.8.ls Zinc finger, ZZ type                            46.3    9.4e-11   1
PF00564.15.fs PB1 domain                                      27.7    3.2e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00564.15.fs   1/1       7    41 ..    47    89 .]    27.7  3.2e-07
PF00569.8.fs   1/1      61   105 ..     1    46 []    44.4  1.6e-11
PF00569.8.ls   1/1      61   105 ..     1    46 []    46.3  9.4e-11

Alignments of top-scoring domains:
PF00564.15.fs: domain 1 of 1, from 7 to 41: score 27.7, E = 3.2e-07
                   *->pDeDgDdlVsitsDeDLeeaieearsllsesksktlrlhvfpa<-*
                      +DeDg dlV  +sDe+L +a+++++         ++r+++ ++   
     bm01376     7    KDEDG-DLVAFSSDEELTMAMSYVKDD-------IFRIYIKEK    41   

PF00569.8.fs: domain 1 of 1, from 61 to 105: score 44.4, E = 1.6e-11
                   *->ihkvytCdgCkeapiigvRYhClrCsdYDLCqsCfstGhkagkHkm<
                       h  ++CdgC   p +g+RY+C +C+dYDLC+ C+  G   g  k  
     bm01376    61    VHPNVICDGCNG-PVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKL  105  

                   -*
                     
     bm01376     -    -    

PF00569.8.ls: domain 1 of 1, from 61 to 105: score 46.3, E = 9.4e-11
                   *->ihkvytCdgCkeapiigvRYhClrCsdYDLCqsCfstGhkagkHkm<
                       h  ++CdgC   p +g+RY+C +C+dYDLC+ C+  G   g  k  
     bm01376    61    VHPNVICDGCNG-PVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKL  105  

                   -*
                     
     bm01376     -    -    

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