hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-09445854/chunk_1/iprscan-20080807-09445854.nocrc
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Query sequence: bm01529
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01852.10.fs START domain                                   180.6    1.8e-56   1
PF01852.10.ls START domain                                   165.2    1.6e-46   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01852.10.ls   1/1       5   209 ..     1   244 []   165.2  1.6e-46
PF01852.10.fs   1/1      52   209 ..    63   244 .]   180.6  1.8e-56

Alignments of top-scoring domains:
PF01852.10.ls: domain 1 of 1, from 5 to 209: score 165.2, E = 1.6e-46
                   *->elaeeaaqelvkmalsdepgWvkssetgrenengdevlqkfepsqvt
                       + e   +++   ++ ++  Wv         + +  v   +  s++t
     bm01529     5    GVLEPQTAQEAPGRCRGALWWVPPT------KREGLVCPSP--SGTT 43   

                   kppGlkdsgeasRasgvVpmvlaFllveellddmeyraqWdkdvrciVsk
                             a+   +++p++++ l+++e++ ++e++++W+k+v+    +
     bm01529    44 -------QPSAALSQTFLPCPAE-LVYQEVILQPERMVLWNKTVT----A 81   

                   aetlevissgeGGnrngalqyyvaelqaltplsPtRDfvfvRywrqdDdH
                   +++l++++++      + + y+v++ +a++++sP RDfv+vR++++    
     bm01529    82 CQILQRVEDN------TLISYDVSAGAAGGVVSP-RDFVNVRRIER---- 120  

                   RFlrdgvyvivdvSvdspqkppeGPpssgvvRaerlpSGyliepcgngpe
                      r+++y+  ++++++  kpp    ++++vR+e++p G+++++ + +p+
     bm01529   121 ---RRDRYLSSGIATSHSAKPP----THKYVRGENGPGGFIVLKSASNPR 163  

                   kskvtwvehvDlkgwlPvhwllrslvksgmafgaktwvatlqrlcek<-*
                   +++++w++++Dlkg+lP ++l+++ +  +m+++a++++++  +l+++   
     bm01529   164 VCTFVWILNTDLKGRLP-RYLIHQSLAATMFEFAFHLRQRISELGAR    209  

PF01852.10.fs: domain 1 of 1, from 52 to 209: score 180.6, E = 1.8e-56
                   *->gvVpmvlaFllveellddmeyraqWdkdvrciVskaetlevissgeG
                      +++p++++ l+++e++ ++e++++W+k+v+    ++++l++++++  
     bm01529    52    TFLPCPAE-LVYQEVILQPERMVLWNKTVT----ACQILQRVEDN-- 91   

                   GnrngalqyyvaelqaltplsPtRDfvfvRywrqdDdHRFlrdgvyvivd
                       + + y+v++ +a++++sP RDfv+vR++++       r+++y+  +
     bm01529    92 ----TLISYDVSAGAAGGVVSP-RDFVNVRRIER-------RRDRYLSSG 129  

                   vSvdspqkppeGPpssgvvRaerlpSGyliepcgngpekskvtwvehvDl
                   +++++  kpp    ++++vR+e++p G+++++ + +p++++++w++++Dl
     bm01529   130 IATSHSAKPP----THKYVRGENGPGGFIVLKSASNPRVCTFVWILNTDL 175  

                   kgwlPvhwllrslvksgmafgaktwvatlqrlcek<-*
                   kg+lP ++l+++ +  +m+++a++++++  +l+++   
     bm01529   176 KGRLP-RYLIHQSLAATMFEFAFHLRQRISELGAR    209  

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