hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-09445854/chunk_1/iprscan-20080807-09445854.nocrc
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Query sequence: bm01529
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00234                                                 148.6    6.6e-40   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00234    1/1       5   209 ..     1   248 []   148.6  6.6e-40

Alignments of top-scoring domains:
SM00234: domain 1 of 1, from 5 to 209: score 148.6, E = 6.6e-40
                   *->evaeeaanellklaassekgWvlspetgeiengdevlsiledgqnpk
                       v e+  +++   ++ ++++W   p    + +g+++ s    g++  
     bm01529     5    GVLEPQTAQEAPGRC-RGALWWVPP---TKREGLVCPSPS--GTT-- 43   

                   qglkvsgealravgvvpmvcaedlvaellddgeyrkeWdknfagivskae
                         + a    +++p++++ ++++e++ ++e++++W+k+++    +++
     bm01529    44 -----QPSAALSQTFLPCPAE-LVYQEVILQPERMVLWNKTVT----ACQ 83   

                   vvevissgtGgnrngviyhyvaksvapgpvsPtRDfvfvRywreddeHRa
                   ++++++++      + i ++v++ +a+g+vsP RDfv+vR++++      
     bm01529    84 ILQRVEDN------TLISYDVSAGAAGGVVSP-RDFVNVRRIER------ 120  

                   lvdgsyvivsvSvthetspptGpssgvvRaellpsgllieplgngpekdd
                    ++++y+ +   ++h  +pp   ++++vR+e++p g+++++ + +p++  
     bm01529   121 -RRDRYLSSGIATSHSAKPP---THKYVRGENGPGGFIVLKSASNPRV-- 164  

                   vkskvtwvsqaDlkGwlPvvhwllrsliksglaefaktRDsvatlqksce
                     ++++w++++DlkG+lP  ++l+++ +  +++efa++  ++++ +++++
     bm01529   165 --CTFVWILNTDLKGRLP--RYLIHQSLAATMFEFAFH--LRQRISELGA 208  

                   k<-*
                   +   
     bm01529   209 R    209  

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