hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-09501261/chunk_1/iprscan-20080807-09501261.nocrc
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Query sequence: bm01550
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 182.5    3.9e-50  11

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/11     19    68 ..     1    46 []    21.2     0.15
SM00320    2/11     71   116 ..     1    46 []     5.3       70
SM00320    3/11    119   158 ..     1    46 []    14.9      2.1
SM00320    4/11    164   204 ..     1    46 []    11.9      6.4
SM00320    5/11    208   247 ..     1    46 []    19.5      0.4
SM00320    6/11    291   330 ..     1    46 []    21.8    0.098
SM00320    7/11    333   371 ..     1    46 []     5.9       57
SM00320    8/11    374   413 ..     1    46 []    28.6  0.00083
SM00320    9/11    420   459 ..     1    46 []    28.6  0.00085
SM00320   10/11    485   526 ..     1    46 []     5.7       63
SM00320   11/11    532   572 ..     1    46 []    19.1     0.47

Alignments of top-scoring domains:
SM00320: domain 1 of 11, from 19 to 68: score 21.2, E = 0.15
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.Dgt....
                      + +  r + gH++  ++ ++a++pd         +a+g   gt++++
     bm01550    19    EeQRQRHYLGHND--DIKCLAIHPDM------VTIATGQvAGTtkeg 57   

                   ......irlWd<-*
                   ++ ++++r+Wd   
     bm01550    58 kplpphVRIWD    68   

SM00320: domain 2 of 11, from 71 to 116: score 5.3, E = 70
                   *->t.kllrtlk..gHtgespVtsvafspdggssdspnllasgs...Dgt
                      + + l++l  +  +   +V++v fs ++    ++nll++ ++++D+ 
     bm01550    71    SlSTLHVLGlgVFDR--AVCCVGFSKSN----GGNLLCAVDesnDHM 111  

                   irlWd<-*
                   + +Wd   
     bm01550   112 LSVWD    116  

SM00320: domain 3 of 11, from 119 to 158: score 14.9, E = 2.1
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + + +   k+ +   +V+  +f+p++     p++l+++++ + i++W
     bm01550   119    KeTKVVDVKCSNE--AVLVATFHPTD-----PTVLITCGkSH-IYFW 157  

                   d<-*
                       
     bm01550   158 T    158  

SM00320: domain 4 of 11, from 164 to 204: score 11.9, E = 6.4
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +k    ++ H+++++V++v+f   g        +++g++ g++++W
     bm01550   164    LsKRQGLFEKHEKPKYVLCVTFLEGG-------DVVTGDsGGNLYVW 203  

                   d<-*
                       
     bm01550   204 G    204  

SM00320: domain 5 of 11, from 208 to 247: score 19.5, E = 0.4
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++   ++l +H+g  +V +++   dg      +l+  g++D+ + lW
     bm01550   208    NrITQAVLGAHDG--GVFGLCALRDG------TLVSGGGrDRRVVLW 246  

                   d<-*
                       
     bm01550   247 G    247  

SM00320: domain 6 of 11, from 291 to 330: score 21.8, E = 0.098
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +      +gH    + +++a +p+        +++++++D+ ++lW
     bm01550   291    HtGFSLLVQGHVE--ELWGLATHPSR------AQFVTCGqDKLVHLW 329  

                   d<-*
                   +   
     bm01550   330 S    330  

SM00320: domain 7 of 11, from 333 to 371: score 5.9, E = 57
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++l +    ++  p +s  f+p+g      ++la+g   g   l 
     bm01550   333    ShQPLWSRI-IED--PARSAGFHPSG------SVLAVGTvTGRWLLL 370  

                   d<-*
                   d   
     bm01550   371 D    371  

SM00320: domain 8 of 11, from 374 to 413: score 28.6, E = 0.00083
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+ l+++ +  +    ++ v+fspdg       +la+gs+D+ ++++
     bm01550   374    ThDLVAIHTDGNE--QISVVSFSPDG------AYLAVGShDNLVYVY 412  

                   d<-*
                       
     bm01550   413 T    413  

SM00320: domain 9 of 11, from 420 to 459: score 28.6, E = 0.00085
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + + l +++gH++   +t++++ +d+      +++++ s+D  i  W
     bm01550   420    KvSRLGKCSGHSS--FITHLDWAQDS------SCFVTNSgDYEILYW 458  

                   d<-*
                   d   
     bm01550   459 D    459  

SM00320: domain 10 of 11, from 485 to 526: score 5.7, E = 63
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                         +  ++++g +g +++++va s+dg      +llas+++ g+++l
     bm01550   485    GfGVFGIWSeGADG-TDINAVARSHDG------KLLASADdFGKVHL 524  

                   Wd<-*
                   ++   
     bm01550   525 FS    526  

SM00320: domain 11 of 11, from 532 to 572: score 19.1, E = 0.47
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ l +++ gH++   Vt vaf  d+     +  l +g++D ++  W
     bm01550   532    PrALSHKYGGHSS--HVTNVAFLWDD-----SMALTTGGkDTSVLQW 571  

                   d<-*
                       
     bm01550   572 R    572  

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