hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20100311/iprscan-20100311-17512653/chunk_1/iprscan-20100311-17512653.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm01576 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 469.3 4.3e-138 16 PF00096.16.fs Zinc finger, C2H2 type 437.9 1.3e-128 16 PF07754.2.fs Domain of unknown function (DUF1610) 40.5 7.6e-10 9 PF01286.9.fs XPA protein N-terminal 31.5 3.2e-08 7 PF01096.9.fs Transcription factor S-II (TFIIS) 27.4 9e-08 10 PF07754.2.ls Domain of unknown function (DUF1610) 26.9 6.5e-05 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 2/16 88 110 .. 1 24 [] 23.8 0.00011 PF00096.16.ls 2/16 88 110 .. 1 24 [] 25.7 0.00015 PF00096.16.ls 3/16 116 138 .. 1 24 [] 26.6 8.1e-05 PF00096.16.fs 3/16 116 138 .. 1 24 [] 24.6 6.8e-05 PF00096.16.ls 4/16 144 166 .. 1 24 [] 23.8 0.00057 PF00096.16.ls 5/16 172 194 .. 1 24 [] 34.1 4.5e-07 PF00096.16.fs 5/16 172 194 .. 1 24 [] 32.1 9.3e-07 PF00096.16.ls 6/16 200 222 .. 1 24 [] 28.1 2.9e-05 PF00096.16.fs 6/16 200 222 .. 1 24 [] 26.1 2.9e-05 PF00096.16.ls 7/16 228 250 .. 1 24 [] 32.5 1.4e-06 PF00096.16.fs 7/16 228 250 .. 1 24 [] 30.5 2.4e-06 PF00096.16.ls 8/16 256 278 .. 1 24 [] 32.4 1.4e-06 PF00096.16.fs 8/16 256 278 .. 1 24 [] 30.5 2.4e-06 PF00096.16.ls 9/16 284 306 .. 1 24 [] 33.1 9.3e-07 PF00096.16.fs 9/16 284 306 .. 1 24 [] 31.1 1.7e-06 PF00096.16.fs 10/16 312 334 .. 1 24 [] 30.0 3.1e-06 PF00096.16.ls 10/16 312 334 .. 1 24 [] 32.0 1.9e-06 PF00096.16.fs 11/16 340 362 .. 1 24 [] 23.8 0.00011 PF00096.16.ls 11/16 340 362 .. 1 24 [] 25.8 0.00014 PF00096.16.fs 12/16 368 390 .. 1 24 [] 29.3 4.7e-06 PF00096.16.ls 12/16 368 390 .. 1 24 [] 31.3 3.2e-06 PF00096.16.ls 13/16 396 418 .. 1 24 [] 30.9 4.2e-06 PF00096.16.fs 13/16 396 418 .. 1 24 [] 28.9 5.9e-06 PF00096.16.fs 14/16 520 542 .. 1 24 [] 27.6 1.2e-05 PF00096.16.ls 14/16 520 542 .. 1 24 [] 29.6 1e-05 PF00096.16.ls 15/16 548 570 .. 1 24 [] 34.8 2.8e-07 PF00096.16.fs 15/16 548 570 .. 1 24 [] 32.8 6.2e-07 PF00096.16.fs 16/16 576 598 .. 1 24 [] 30.6 2.3e-06 PF00096.16.ls 16/16 576 598 .. 1 24 [] 32.5 1.3e-06 Alignments of top-scoring domains: PF00096.16.fs: domain 2 of 16, from 88 to 110: score 23.8, E = 0.00011 *->ykCpfdCgksFsrksnLkrHlrtH<-* y Cp C k++++ +L++H r+H bm01576 88 YACP-LCPKAYKTAPELRSHGRSH 110 PF00096.16.ls: domain 2 of 16, from 88 to 110: score 25.7, E = 0.00015 *->ykCpfdCgksFsrksnLkrHlrtH<-* y Cp C k++++ +L++H r+H bm01576 88 YACP-LCPKAYKTAPELRSHGRSH 110 PF00096.16.ls: domain 3 of 16, from 116 to 138: score 26.6, E = 8.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp +Cg++F ++ L+ Hl +H bm01576 116 FPCP-ECGRRFMQPVCLRVHLASH 138 PF00096.16.fs: domain 3 of 16, from 116 to 138: score 24.6, E = 6.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp +Cg++F ++ L+ Hl +H bm01576 116 FPCP-ECGRRFMQPVCLRVHLASH 138 PF00096.16.ls: domain 4 of 16, from 144 to 166: score 23.8, E = 0.00057 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +C k++ s Lk H+r H bm01576 144 FRCA-HCPKAYGALSKLKIHQRGH 166 PF00096.16.ls: domain 5 of 16, from 172 to 194: score 34.1, E = 4.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C dCgksF ++s +++H+rtH bm01576 172 YACA-DCGKSFADPSVFRKHRRTH 194 PF00096.16.fs: domain 5 of 16, from 172 to 194: score 32.1, E = 9.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C dCgksF ++s +++H+rtH bm01576 172 YACA-DCGKSFADPSVFRKHRRTH 194 PF00096.16.ls: domain 6 of 16, from 200 to 222: score 28.1, E = 2.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cgk++ ++L++H r+H bm01576 200 YSCE-RCGKAYAELKDLRNHERSH 222 PF00096.16.fs: domain 6 of 16, from 200 to 222: score 26.1, E = 2.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cgk++ ++L++H r+H bm01576 200 YSCE-RCGKAYAELKDLRNHERSH 222 PF00096.16.ls: domain 7 of 16, from 228 to 250: score 32.5, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +CgksFsr+s+L+ H+r+H bm01576 228 FLCS-ECGKSFSRSSSLTCHQRIH 250 PF00096.16.fs: domain 7 of 16, from 228 to 250: score 30.5, E = 2.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +CgksFsr+s+L+ H+r+H bm01576 228 FLCS-ECGKSFSRSSSLTCHQRIH 250 PF00096.16.ls: domain 8 of 16, from 256 to 278: score 32.4, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp Cgk F++ s++++H rtH bm01576 256 YRCP-ACGKGFTQLSSYQSHERTH 278 PF00096.16.fs: domain 8 of 16, from 256 to 278: score 30.5, E = 2.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp Cgk F++ s++++H rtH bm01576 256 YRCP-ACGKGFTQLSSYQSHERTH 278 PF00096.16.ls: domain 9 of 16, from 284 to 306: score 33.1, E = 9.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp Cg++Fs++s+++rH+r H bm01576 284 FLCP-RCGRMFSDPSSFRRHQRAH 306 PF00096.16.fs: domain 9 of 16, from 284 to 306: score 31.1, E = 1.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp Cg++Fs++s+++rH+r H bm01576 284 FLCP-RCGRMFSDPSSFRRHQRAH 306 PF00096.16.fs: domain 10 of 16, from 312 to 334: score 30.0, E = 3.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F+++++L +H+r+H bm01576 312 YHCE-KCGKDFRQPADLAMHRRVH 334 PF00096.16.ls: domain 10 of 16, from 312 to 334: score 32.0, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F+++++L +H+r+H bm01576 312 YHCE-KCGKDFRQPADLAMHRRVH 334 PF00096.16.fs: domain 11 of 16, from 340 to 362: score 23.8, E = 0.00011 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC +C+k+F + +LkrH +H bm01576 340 FKCL-QCDKTFVASWDLKRHALVH 362 PF00096.16.ls: domain 11 of 16, from 340 to 362: score 25.8, E = 0.00014 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC +C+k+F + +LkrH +H bm01576 340 FKCL-QCDKTFVASWDLKRHALVH 362 PF00096.16.fs: domain 12 of 16, from 368 to 390: score 29.3, E = 4.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg++F +++L++H r+H bm01576 368 FRCE-ECGRAFAERASLTKHSRVH 390 PF00096.16.ls: domain 12 of 16, from 368 to 390: score 31.3, E = 3.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg++F +++L++H r+H bm01576 368 FRCE-ECGRAFAERASLTKHSRVH 390 PF00096.16.ls: domain 13 of 16, from 396 to 418: score 30.9, E = 4.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ CgksF +s+L++H rtH bm01576 396 FHCN-ACGKSFVVSSSLRKHERTH 418 PF00096.16.fs: domain 13 of 16, from 396 to 418: score 28.9, E = 5.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ CgksF +s+L++H rtH bm01576 396 FHCN-ACGKSFVVSSSLRKHERTH 418 PF00096.16.fs: domain 14 of 16, from 520 to 542: score 27.6, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +C+++Fs+ L+rH r+H bm01576 520 FVCR-ECKETFSTMTLLRRHERSH 542 PF00096.16.ls: domain 14 of 16, from 520 to 542: score 29.6, E = 1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +C+++Fs+ L+rH r+H bm01576 520 FVCR-ECKETFSTMTLLRRHERSH 542 PF00096.16.ls: domain 15 of 16, from 548 to 570: score 34.8, E = 2.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +CgksFs+++ L++H rtH bm01576 548 FPCT-QCGKSFSDRAGLRKHSRTH 570 PF00096.16.fs: domain 15 of 16, from 548 to 570: score 32.8, E = 6.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +CgksFs+++ L++H rtH bm01576 548 FPCT-QCGKSFSDRAGLRKHSRTH 570 PF00096.16.fs: domain 16 of 16, from 576 to 598: score 30.6, E = 2.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +C k+F + s+L++H rtH bm01576 576 YTCP-HCPKAFLSASDLRKHERTH 598 PF00096.16.ls: domain 16 of 16, from 576 to 598: score 32.5, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +C k+F + s+L++H rtH bm01576 576 YTCP-HCPKAFLSASDLRKHERTH 598 //