hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-20544279/chunk_1/iprscan-20090617-20544279.nocrc
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Query sequence: bm01714
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF05739.9.ls SNARE domain                                    95.2    1.8e-25   1
PF05739.9.fs SNARE domain                                    93.2      4e-25   1
PF00804.15.fs Syntaxin                                        60.8    2.1e-16   1
PF00804.15.ls Syntaxin                                        62.7    1.1e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00804.15.fs   1/1      36   132 ..     1   110 []    60.8  2.1e-16
PF00804.15.ls   1/1      36   132 ..     1   110 []    62.7  1.1e-15
PF05739.9.fs   1/1     201   263 ..     1    63 []    93.2    4e-25
PF05739.9.ls   1/1     201   263 ..     1    63 []    95.2  1.8e-25

Alignments of top-scoring domains:
PF00804.15.fs: domain 1 of 1, from 36 to 132: score 60.8, E = 2.1e-16
                   *->slpeFfeekveeIrnniekisqkleeLaklhkkilsppdsdveikel
                      +l++F +  ++++++ni++isq  ++++ l +++++ +ds     +l
     bm01714    36    QLRDFSSI-IQTCSGNIQRISQATAQIKNLMSQLGTKQDSS----KL 77   

                   rrkleqliteinqlakklkrklkaleeanlseersqlsssdtrirktqts
                   +++l+ql +++nqlak+++++lk     +l + +++ls+s++r +++q +
     bm01714    78 QENLQQLQHSTNQLAKETNELLK-----ELGSLPLPLSTSEQRQQRLQKE 122  

                   llsGlrkkfkevm<-*
                   +l    ++f +++   
     bm01714   123 RLM---NDFSAAL    132  

PF00804.15.ls: domain 1 of 1, from 36 to 132: score 62.7, E = 1.1e-15
                   *->slpeFfeekveeIrnniekisqkleeLaklhkkilsppdsdveikel
                      +l++F +  ++++++ni++isq  ++++ l +++++ +ds     +l
     bm01714    36    QLRDFSSI-IQTCSGNIQRISQATAQIKNLMSQLGTKQDSS----KL 77   

                   rrkleqliteinqlakklkrklkaleeanlseersqlsssdtrirktqts
                   +++l+ql +++nqlak+++++lk     +l + +++ls+s++r +++q +
     bm01714    78 QENLQQLQHSTNQLAKETNELLK-----ELGSLPLPLSTSEQRQQRLQKE 122  

                   llsGlrkkfkevm<-*
                   +l    ++f +++   
     bm01714   123 RLM---NDFSAAL    132  

PF05739.9.fs: domain 1 of 1, from 201 to 263: score 93.2, E = 4e-25
                   *->eRdeeleelessigeLkqlfldlgteVeeQgellDrIddnventqsr
                      eR+ ++++le++i +++q+f+dl++++++Qg+l+D+I++nve+++++
     bm01714   201    ERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVH 247  

                   verankrLkkaaryqk<-*
                   vera+++L++aa yqk   
     bm01714   248 VERATEQLQRAAYYQK    263  

PF05739.9.ls: domain 1 of 1, from 201 to 263: score 95.2, E = 1.8e-25
                   *->eRdeeleelessigeLkqlfldlgteVeeQgellDrIddnventqsr
                      eR+ ++++le++i +++q+f+dl++++++Qg+l+D+I++nve+++++
     bm01714   201    ERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVH 247  

                   verankrLkkaaryqk<-*
                   vera+++L++aa yqk   
     bm01714   248 VERATEQLQRAAYYQK    263  

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