# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm01735.fasta.nr -Q bm01735.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm01735, 430 aa vs /cdna2/lib/nr/nr library 3071326396 residues in 8985982 sequences statistics sampled from 60000 to 8984723 sequences Expectation_n fit: rho(ln(x))= 5.0156+/-0.00018; mu= 11.1333+/- 0.010 mean_var=68.1399+/-13.554, 0's: 32 Z-trim: 44 B-trim: 0 in 0/66 Lambda= 0.155372 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8985982) gi|585126|sp|P37268.1|FDFT_HUMAN RecName: Full=Squ ( 417) 2776 631.3 1.5e-178 gi|30584837|gb|AAP36671.1| Homo sapiens farnesyl-d ( 418) 2776 631.3 1.5e-178 gi|14328083|gb|AAH09251.1| Farnesyl-diphosphate fa ( 417) 2773 630.6 2.4e-178 gi|435677|emb|CAA48896.1| farnesyl-diphosphate far ( 417) 2771 630.1 3.3e-178 gi|913349|gb|AAB33404.1| squalene synthase [Homo s ( 417) 2767 629.2 6.1e-178 gi|109085567|ref|XP_001086419.1| PREDICTED: farnes ( 417) 2759 627.4 2.1e-177 gi|109085573|ref|XP_001086183.1| PREDICTED: farnes ( 425) 2733 621.6 1.2e-175 gi|114623530|ref|XP_001140917.1| PREDICTED: farnes ( 410) 2705 615.3 9.2e-174 gi|114623514|ref|XP_001140371.1| PREDICTED: farnes ( 415) 2704 615.1 1.1e-173 gi|114623518|ref|XP_001140197.1| PREDICTED: farnes ( 415) 2704 615.1 1.1e-173 gi|114623516|ref|XP_001141004.1| PREDICTED: farnes ( 443) 2703 614.9 1.3e-173 gi|114623528|ref|XP_001140843.1| PREDICTED: farnes ( 410) 2702 614.7 1.5e-173 gi|109085563|ref|XP_001086070.1| PREDICTED: farnes ( 415) 2693 612.7 6e-173 gi|109085571|ref|XP_001085747.1| PREDICTED: farnes ( 410) 2688 611.5 1.3e-172 gi|109085565|ref|XP_001085961.1| PREDICTED: farnes ( 425) 2687 611.3 1.6e-172 gi|109085569|ref|XP_001085624.1| PREDICTED: farnes ( 410) 2685 610.9 2.1e-172 gi|73993617|ref|XP_534557.2| PREDICTED: similar to ( 417) 2619 596.1 5.9e-168 gi|61316445|ref|NP_001013022.1| squalene synthase ( 417) 2615 595.2 1.1e-167 gi|122138639|sp|Q32KR6.1|FDFT_BOVIN RecName: Full= ( 417) 2609 593.8 2.8e-167 gi|114623534|ref|XP_001141087.1| PREDICTED: farnes ( 468) 2548 580.2 4e-163 gi|194388454|dbj|BAG60195.1| unnamed protein produ ( 474) 2548 580.2 4e-163 gi|26345014|dbj|BAC36156.1| unnamed protein produc ( 416) 2510 571.6 1.3e-160 gi|1706773|sp|P53798.1|FDFT_MOUSE RecName: Full=Sq ( 416) 2504 570.3 3.4e-160 gi|74189702|dbj|BAE36836.1| unnamed protein produc ( 416) 2499 569.2 7.4e-160 gi|399484|sp|Q02769.1|FDFT_RAT RecName: Full=Squal ( 416) 2455 559.3 6.9e-157 gi|194208309|ref|XP_001915483.1| PREDICTED: simila ( 408) 2435 554.8 1.5e-155 gi|221039532|dbj|BAH11529.1| unnamed protein produ ( 353) 2349 535.5 8.6e-150 gi|221045454|dbj|BAH14404.1| unnamed protein produ ( 353) 2340 533.5 3.5e-149 gi|126303285|ref|XP_001372440.1| PREDICTED: simila ( 417) 2310 526.8 4.2e-147 gi|109085577|ref|XP_001085859.1| PREDICTED: farnes ( 408) 2286 521.4 1.7e-145 gi|224048923|ref|XP_002186800.1| PREDICTED: farnes ( 418) 2242 511.6 1.6e-142 gi|11514495|pdb|1EZF|A Chain A, Crystal Structure ( 340) 2237 510.4 3e-142 gi|194390212|dbj|BAG61868.1| unnamed protein produ ( 332) 2212 504.8 1.4e-140 gi|6002565|gb|AAF00038.1| squalene synthase [Mus m ( 368) 2210 504.3 2.1e-140 gi|53130606|emb|CAG31632.1| hypothetical protein [ ( 418) 2208 503.9 3.2e-140 gi|197245548|gb|AAI68496.1| Unknown (protein for M ( 416) 2109 481.7 1.5e-133 gi|148688708|gb|EDL20655.1| mCG10034 [Mus musculus ( 376) 2102 480.1 4.2e-133 gi|193786634|dbj|BAG51957.1| unnamed protein produ ( 306) 2026 463.0 4.8e-128 gi|220673404|emb|CAX13362.1| novel protein similar ( 418) 1931 441.9 1.6e-121 gi|47224313|emb|CAG09159.1| unnamed protein produc ( 444) 1801 412.7 9.8e-113 gi|72137101|ref|XP_790906.1| PREDICTED: hypothetic ( 411) 1706 391.4 2.4e-106 gi|194382104|dbj|BAG58807.1| unnamed protein produ ( 374) 1641 376.8 5.4e-102 gi|114623532|ref|XP_001141244.1| PREDICTED: farnes ( 358) 1583 363.8 4.2e-98 gi|109085575|ref|XP_001086293.1| PREDICTED: farnes ( 358) 1566 360.0 6e-97 gi|194377082|dbj|BAG63102.1| unnamed protein produ ( 250) 1512 347.8 2e-93 gi|190583204|gb|EDV23275.1| hypothetical protein T ( 408) 1483 341.4 2.6e-91 gi|73993621|ref|XP_856645.1| PREDICTED: similar to ( 358) 1473 339.1 1.1e-90 gi|73993619|ref|XP_856603.1| PREDICTED: similar to ( 385) 1344 310.2 6e-82 gi|163771716|gb|EDQ85378.1| predicted protein [Mon ( 475) 1293 298.9 2e-78 gi|194390506|dbj|BAG62012.1| unnamed protein produ ( 174) 1172 271.4 1.3e-70 >>gi|585126|sp|P37268.1|FDFT_HUMAN RecName: Full=Squalen (417 aa) initn: 2776 init1: 2776 opt: 2776 Z-score: 3362.8 bits: 631.3 E(): 1.5e-178 Smith-Waterman score: 2776; 100.000% identity (100.000% similar) in 417 aa overlap (14-430:1-417) 10 20 30 40 50 60 bm0173 GESRARESAACARMEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYL ::::::::::::::::::::::::::::::::::::::::::::::: gi|585 MEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYL 10 20 30 40 70 80 90 100 110 120 bm0173 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|585 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP 50 60 70 80 90 100 130 140 150 160 170 180 bm0173 DWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|585 DWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQE 110 120 130 140 150 160 190 200 210 220 230 240 bm0173 WDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|585 WDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGG 170 180 190 200 210 220 250 260 270 280 290 300 bm0173 REFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|585 REFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFN 230 240 250 260 270 280 310 320 330 340 350 360 bm0173 FCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|585 FCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYH 290 300 310 320 330 340 370 380 390 400 410 420 bm0173 RIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|585 RIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQV 350 360 370 380 390 400 430 bm0173 TEDYVQTGEH :::::::::: gi|585 TEDYVQTGEH 410 >>gi|30584837|gb|AAP36671.1| Homo sapiens farnesyl-dipho (418 aa) initn: 2776 init1: 2776 opt: 2776 Z-score: 3362.8 bits: 631.3 E(): 1.5e-178 Smith-Waterman score: 2776; 100.000% identity (100.000% similar) in 417 aa overlap (14-430:1-417) 10 20 30 40 50 60 bm0173 GESRARESAACARMEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYL ::::::::::::::::::::::::::::::::::::::::::::::: gi|305 MEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYL 10 20 30 40 70 80 90 100 110 120 bm0173 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP 50 60 70 80 90 100 130 140 150 160 170 180 bm0173 DWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 DWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQE 110 120 130 140 150 160 190 200 210 220 230 240 bm0173 WDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 WDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGG 170 180 190 200 210 220 250 260 270 280 290 300 bm0173 REFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 REFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFN 230 240 250 260 270 280 310 320 330 340 350 360 bm0173 FCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 FCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYH 290 300 310 320 330 340 370 380 390 400 410 420 bm0173 RIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 RIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQV 350 360 370 380 390 400 430 bm0173 TEDYVQTGEH :::::::::: gi|305 TEDYVQTGEHL 410 >>gi|14328083|gb|AAH09251.1| Farnesyl-diphosphate farnes (417 aa) initn: 2773 init1: 2773 opt: 2773 Z-score: 3359.2 bits: 630.6 E(): 2.4e-178 Smith-Waterman score: 2773; 99.760% identity (100.000% similar) in 417 aa overlap (14-430:1-417) 10 20 30 40 50 60 bm0173 GESRARESAACARMEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYL ::::::::::::::::::::::::::::::::::::::::::::.:: gi|143 MEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYRYL 10 20 30 40 70 80 90 100 110 120 bm0173 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|143 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP 50 60 70 80 90 100 130 140 150 160 170 180 bm0173 DWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|143 DWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQE 110 120 130 140 150 160 190 200 210 220 230 240 bm0173 WDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|143 WDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGG 170 180 190 200 210 220 250 260 270 280 290 300 bm0173 REFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|143 REFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFN 230 240 250 260 270 280 310 320 330 340 350 360 bm0173 FCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|143 FCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYH 290 300 310 320 330 340 370 380 390 400 410 420 bm0173 RIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|143 RIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQV 350 360 370 380 390 400 430 bm0173 TEDYVQTGEH :::::::::: gi|143 TEDYVQTGEH 410 >>gi|435677|emb|CAA48896.1| farnesyl-diphosphate farnesy (417 aa) initn: 2771 init1: 2771 opt: 2771 Z-score: 3356.7 bits: 630.1 E(): 3.3e-178 Smith-Waterman score: 2771; 99.760% identity (100.000% similar) in 417 aa overlap (14-430:1-417) 10 20 30 40 50 60 bm0173 GESRARESAACARMEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYL ::::::::::::::::::::::::::::::::::::::::::::::: gi|435 MEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYL 10 20 30 40 70 80 90 100 110 120 bm0173 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|435 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP 50 60 70 80 90 100 130 140 150 160 170 180 bm0173 DWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|435 DWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQE 110 120 130 140 150 160 190 200 210 220 230 240 bm0173 WDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|435 WDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGG 170 180 190 200 210 220 250 260 270 280 290 300 bm0173 REFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|435 REFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFN 230 240 250 260 270 280 310 320 330 340 350 360 bm0173 FCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|435 FCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYH 290 300 310 320 330 340 370 380 390 400 410 420 bm0173 RIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQV ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: gi|435 RIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLATLSQV 350 360 370 380 390 400 430 bm0173 TEDYVQTGEH :::::::::: gi|435 TEDYVQTGEH 410 >>gi|913349|gb|AAB33404.1| squalene synthase [Homo sapie (417 aa) initn: 2767 init1: 2767 opt: 2767 Z-score: 3351.9 bits: 629.2 E(): 6.1e-178 Smith-Waterman score: 2767; 99.520% identity (100.000% similar) in 417 aa overlap (14-430:1-417) 10 20 30 40 50 60 bm0173 GESRARESAACARMEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYL ::::::::::::::::::::::::::::::::::::::::::::.:: gi|913 MEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYRYL 10 20 30 40 70 80 90 100 110 120 bm0173 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|913 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP 50 60 70 80 90 100 130 140 150 160 170 180 bm0173 DWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|913 DWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQE 110 120 130 140 150 160 190 200 210 220 230 240 bm0173 WDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|913 WDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGG 170 180 190 200 210 220 250 260 270 280 290 300 bm0173 REFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|913 REFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFN 230 240 250 260 270 280 310 320 330 340 350 360 bm0173 FCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|913 FCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYH 290 300 310 320 330 340 370 380 390 400 410 420 bm0173 RIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQV :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|913 RIPDSNPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQV 350 360 370 380 390 400 430 bm0173 TEDYVQTGEH :::::::::: gi|913 TEDYVQTGEH 410 >>gi|109085567|ref|XP_001086419.1| PREDICTED: farnesyl-d (417 aa) initn: 2759 init1: 2759 opt: 2759 Z-score: 3342.2 bits: 627.4 E(): 2.1e-177 Smith-Waterman score: 2759; 99.520% identity (99.760% similar) in 417 aa overlap (14-430:1-417) 10 20 30 40 50 60 bm0173 GESRARESAACARMEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYL ::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYL 10 20 30 40 70 80 90 100 110 120 bm0173 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP 50 60 70 80 90 100 130 140 150 160 170 180 bm0173 DWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQE ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|109 DWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICQRMGIGMAEFLDKHVTSEQE 110 120 130 140 150 160 190 200 210 220 230 240 bm0173 WDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|109 WDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQEG 170 180 190 200 210 220 250 260 270 280 290 300 bm0173 REFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 REFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFN 230 240 250 260 270 280 310 320 330 340 350 360 bm0173 FCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 FCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYH 290 300 310 320 330 340 370 380 390 400 410 420 bm0173 RIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQV 350 360 370 380 390 400 430 bm0173 TEDYVQTGEH :::::::::: gi|109 TEDYVQTGEH 410 >>gi|109085573|ref|XP_001086183.1| PREDICTED: farnesyl-d (425 aa) initn: 1626 init1: 1626 opt: 2733 Z-score: 3310.6 bits: 621.6 E(): 1.2e-175 Smith-Waterman score: 2733; 97.647% identity (97.882% similar) in 425 aa overlap (14-430:1-425) 10 20 30 40 50 60 bm0173 GESRARESAACARMEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYL ::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYL 10 20 30 40 70 80 90 100 110 120 bm0173 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP 50 60 70 80 90 100 130 140 150 160 170 180 bm0173 DWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQE ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|109 DWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICQRMGIGMAEFLDKHVTSEQE 110 120 130 140 150 160 190 200 210 220 230 bm0173 WDKY--------CHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRD :::: :::::::::::::::::::::::::::::::::::::::::::::::: gi|109 WDKYFKHHLLQYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRD 170 180 190 200 210 220 240 250 260 270 280 290 bm0173 YLEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSR :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 YLEDQQEGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSR 230 240 250 260 270 280 300 310 320 330 340 350 bm0173 LRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIY 290 300 310 320 330 340 360 370 380 390 400 410 bm0173 QYMEEIYHRIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QYMEEIYHRIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQ 350 360 370 380 390 400 420 430 bm0173 YLTTLSQVTEDYVQTGEH :::::::::::::::::: gi|109 YLTTLSQVTEDYVQTGEH 410 420 >>gi|114623530|ref|XP_001140917.1| PREDICTED: farnesyl-d (410 aa) initn: 1921 init1: 1921 opt: 2705 Z-score: 3276.9 bits: 615.3 E(): 9.2e-174 Smith-Waterman score: 2705; 98.321% identity (98.321% similar) in 417 aa overlap (14-430:1-410) 10 20 30 40 50 60 bm0173 GESRARESAACARMEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYL ::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYL 10 20 30 40 70 80 90 100 110 120 bm0173 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP 50 60 70 80 90 100 130 140 150 160 170 180 bm0173 DWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQE ::::::::::::: :::::::::::::::::::::::::::::::::::::::: gi|114 DWRFMESKEKDRQ-------ISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQE 110 120 130 140 150 160 190 200 210 220 230 240 bm0173 WDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 WDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGG 170 180 190 200 210 220 250 260 270 280 290 300 bm0173 REFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 REFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFN 230 240 250 260 270 280 310 320 330 340 350 360 bm0173 FCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYH 290 300 310 320 330 340 370 380 390 400 410 420 bm0173 RIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQV 350 360 370 380 390 400 430 bm0173 TEDYVQTGEH :::::::::: gi|114 TEDYVQTGEH 410 >>gi|114623514|ref|XP_001140371.1| PREDICTED: farnesyl-d (415 aa) initn: 2703 init1: 2703 opt: 2704 Z-score: 3275.6 bits: 615.1 E(): 1.1e-173 Smith-Waterman score: 2704; 99.268% identity (99.512% similar) in 410 aa overlap (14-423:1-410) 10 20 30 40 50 60 bm0173 GESRARESAACARMEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYL ::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYL 10 20 30 40 70 80 90 100 110 120 bm0173 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP 50 60 70 80 90 100 130 140 150 160 170 180 bm0173 DWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQE 110 120 130 140 150 160 190 200 210 220 230 240 bm0173 WDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 WDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGG 170 180 190 200 210 220 250 260 270 280 290 300 bm0173 REFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 REFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFN 230 240 250 260 270 280 310 320 330 340 350 360 bm0173 FCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYH 290 300 310 320 330 340 370 380 390 400 410 420 bm0173 RIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQD 350 360 370 380 390 400 430 bm0173 TEDYVQTGEH .: gi|114 WHDRPTAD 410 >>gi|114623518|ref|XP_001140197.1| PREDICTED: farnesyl-d (415 aa) initn: 2704 init1: 2704 opt: 2704 Z-score: 3275.6 bits: 615.1 E(): 1.1e-173 Smith-Waterman score: 2704; 99.510% identity (99.755% similar) in 408 aa overlap (14-421:1-408) 10 20 30 40 50 60 bm0173 GESRARESAACARMEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYL ::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYL 10 20 30 40 70 80 90 100 110 120 bm0173 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQP 50 60 70 80 90 100 130 140 150 160 170 180 bm0173 DWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQE 110 120 130 140 150 160 190 200 210 220 230 240 bm0173 WDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 WDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGG 170 180 190 200 210 220 250 260 270 280 290 300 bm0173 REFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 REFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFN 230 240 250 260 270 280 310 320 330 340 350 360 bm0173 FCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYH 290 300 310 320 330 340 370 380 390 400 410 420 bm0173 RIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQY 350 360 370 380 390 400 430 bm0173 TEDYVQTGEH . gi|114 SSLESQPA 410 430 residues in 1 query sequences 3071326396 residues in 8985982 library sequences Tcomplib [34.26] (8 proc) start: Wed Jun 17 20:57:40 2009 done: Wed Jun 17 21:00:54 2009 Total Scan time: 1095.620 Total Display time: 0.120 Function used was FASTA [version 34.26.5 April 26, 2007]