hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-21005431/chunk_1/iprscan-20090617-21005431.nocrc
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Query sequence: bm01735
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00494.10.ls Squalene/phytoene synthase                     527.7   1.2e-155   1
PF00494.10.fs Squalene/phytoene synthase                     525.9   4.1e-155   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00494.10.fs   1/1      60   347 ..     1   319 []   525.9 4.1e-155
PF00494.10.ls   1/1      60   347 ..     1   319 []   527.7 1.2e-155

Alignments of top-scoring domains:
PF00494.10.fs: domain 1 of 1, from 60 to 347: score 525.9, E = 4.1e-155
                   *->laqgSkSFalairLlppelRravlalYlwCRaaDdvVDDmtlpfasr
                      l+q+S+SFa++i+ l++e+R+av+++Yl++Ra+D+++DDmt++    
     bm01735    60    LNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTIS---- 102  

                   saaekknpalldflearleaayrGrpaapkekDapvdrAFaPCAYqALdv
                     +ekk+p+l++f+++++++++r++++  kekD++v+++F+       ++
     bm01735   103 --VEKKVPLLHNFHSFLYQPDWRFMES--KEKDRQVLEDFP-------TI 141  

                   leefdiprepfrdlIedITkrMGaGmamDlekreknlqyryatfeDllrY
                   ++ef+++ e+++++I+dI++rMG+Gma++l+k+       +++++++++Y
     bm01735   142 SLEFRNLAEKYQTVIADICRRMGIGMAEFLDKH-------VTSEQEWDKY 184  

                   CyyVAGtVGlmmarlmgvrdledpAdwqleevlalrAcdLGLAlQLTNIa
                   C+yVAG+VG++++rl+ ++++edp   ++ e+++ rA+++GL+lQ+TNI+
     bm01735   185 CHYVAGLVGIGLSRLFSASEFEDP---LVGEDTE-RANSMGLFLQKTNII 230  

                   RDvgEDarrGPCRvYLPtewLsqyGlsvedllapentmPdkrirrvlrrl
                   RD++ED++ G  R ++P+e++s+y+++++d+++pen   d+ ++++l++l
     bm01735   231 RDYLEDQQGG--REFWPQEVWSRYVKKLGDFAKPENI--DL-AVQCLNEL 275  

                   ldnArayyedAlaGlagLppqsrfpiaAApqvYagIgdaieangydvfrr
                   ++nA+++++d++++l++L++qs+f+++A+pqv+a++++a+++n+++vf++
     bm01735   276 ITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKG 325  

                   Raktrkgeklllllaallralv<-*
                    +k+rkg++++l+++a+++++v   
     bm01735   326 AVKIRKGQAVTLMMDATNMPAV    347  

PF00494.10.ls: domain 1 of 1, from 60 to 347: score 527.7, E = 1.2e-155
                   *->laqgSkSFalairLlppelRravlalYlwCRaaDdvVDDmtlpfasr
                      l+q+S+SFa++i+ l++e+R+av+++Yl++Ra+D+++DDmt++    
     bm01735    60    LNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTIS---- 102  

                   saaekknpalldflearleaayrGrpaapkekDapvdrAFaPCAYqALdv
                     +ekk+p+l++f+++++++++r++++  kekD++v+++F+       ++
     bm01735   103 --VEKKVPLLHNFHSFLYQPDWRFMES--KEKDRQVLEDFP-------TI 141  

                   leefdiprepfrdlIedITkrMGaGmamDlekreknlqyryatfeDllrY
                   ++ef+++ e+++++I+dI++rMG+Gma++l+k+       +++++++++Y
     bm01735   142 SLEFRNLAEKYQTVIADICRRMGIGMAEFLDKH-------VTSEQEWDKY 184  

                   CyyVAGtVGlmmarlmgvrdledpAdwqleevlalrAcdLGLAlQLTNIa
                   C+yVAG+VG++++rl+ ++++edp   ++ e+++ rA+++GL+lQ+TNI+
     bm01735   185 CHYVAGLVGIGLSRLFSASEFEDP---LVGEDTE-RANSMGLFLQKTNII 230  

                   RDvgEDarrGPCRvYLPtewLsqyGlsvedllapentmPdkrirrvlrrl
                   RD++ED++ G  R ++P+e++s+y+++++d+++pen   d+ ++++l++l
     bm01735   231 RDYLEDQQGG--REFWPQEVWSRYVKKLGDFAKPENI--DL-AVQCLNEL 275  

                   ldnArayyedAlaGlagLppqsrfpiaAApqvYagIgdaieangydvfrr
                   ++nA+++++d++++l++L++qs+f+++A+pqv+a++++a+++n+++vf++
     bm01735   276 ITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKG 325  

                   Raktrkgeklllllaallralv<-*
                    +k+rkg++++l+++a+++++v   
     bm01735   326 AVKIRKGQAVTLMMDATNMPAV    347  

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