hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-21005431/chunk_1/iprscan-20090617-21005431.nocrc
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Query sequence: bm01735
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
TIGR01559   squal_synth: farnesyl-diphosphate farnesy   911.1   1.6e-271   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
TIGR01559     1/1      51   383 ..     1   350 []   911.1 1.6e-271

Alignments of top-scoring domains:
TIGR01559: domain 1 of 1, from 51 to 383: score 911.1, E = 1.6e-271
                   *->pelrrCYelLnltSRSFAaVIqeLppElRnAVciFYLVLRALDTvED
                      ++l++CY++Ln+tSRSFAaVIq+L++E+RnAVciFYLVLRALDT+ED
     bm01735    51    SSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLED 97   

                   DMtIsvDkKiPlLRdFhkkiydtdWrFtesdPnekDRqlLddFpvVsleF
                   DMtIsv+kK+PlL++Fh+++y++dWrF+es  +ekDRq+L+dFp++sleF
     bm01735    98 DMTISVEKKVPLLHNFHSFLYQPDWRFMES--KEKDRQVLEDFPTISLEF 145  

                   lkLkpkYQEVIadITkRMGnGMAdfvlkevtNengvdTVeDYDkYCHYVA
                   ++L++kYQ+VIadI++RMG+GMA+f++k+vt+e      +++DkYCHYVA
     bm01735   146 RNLAEKYQTVIADICRRMGIGMAEFLDKHVTSE------QEWDKYCHYVA 189  

                   GLVGlGLSRLfvasgfedpsLaesealsNSMGLFLQKTNIIRDYlEDide
                   GLVG+GLSRLf+as+fedp+++e+++++NSMGLFLQKTNIIRDYlED+++
     bm01735   190 GLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQG 239  

                   lPkgRmFWPREIWsKYAkkLgDFkkPeNsekAlqCLNelVtNALsHatDc
                      gR+FWP+E+Ws+Y+kkLgDF+kPeN+++A+qCLNel+tNAL+H++D+
     bm01735   240 ---GREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDV 286  

                   LtYLsslrdqsiFnFCAIPQVMAIATLALvYNNpdVFqGPKAnVKlRKGt
                   +tYLs+lr+qs+FnFCAIPQVMAIATLA++YNN++VF+G   +VK+RKG+
     bm01735   287 ITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKG---AVKIRKGQ 333  

                   TvkLIlkskNmkaVydiFlrYarkikkKvdpntsEDPNflKtsielskIe
                   +v+L+++++Nm+aV++i+++Y+++i+++++++   DP+++Kt++++s+I+
     bm01735   334 AVTLMMDATNMPAVKAIIYQYMEEIYHRIPDS---DPSSSKTRQIISTIR 380  

                   qlc<-*
                   +++   
     bm01735   381 TQN    383  

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