hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-10070319/chunk_1/iprscan-20080807-10070319.nocrc
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Query sequence: bm01750
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or    163.5    5.1e-46   3
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or    154.3    2.9e-43   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/3      81   155 ..     1    74 []    65.6  1.3e-17
PF00076.12.ls   1/3      81   155 ..     1    74 []    67.5  3.9e-17
PF00076.12.fs   2/3     179   250 ..     1    74 []    65.8  1.1e-17
PF00076.12.ls   2/3     179   250 ..     1    74 []    67.8  3.3e-17
PF00076.12.ls   3/3     447   498 ..     1    74 []    19.0   0.0023
PF00076.12.fs   3/3     467   498 ..    43    74 .]    32.1    3e-08

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 3, from 81 to 155: score 65.6, E = 1.3e-17
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lf+g +p++++e+dLk lF++fG+i +  + +D  r tg +kG+aF 
     bm01750    81    LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKD--RFTGMHKGCAFL 125  

                   eFedeedAekAldalnG.kel..ggrelrv<-*
                   ++   e+A kA +al+++k+l++++r++ v   
     bm01750   126 TYCERESALKAQSALHEqKTLpgMNRPIQV    155  

PF00076.12.ls: domain 1 of 3, from 81 to 155: score 67.5, E = 3.9e-17
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lf+g +p++++e+dLk lF++fG+i +  + +D  r tg +kG+aF 
     bm01750    81    LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKD--RFTGMHKGCAFL 125  

                   eFedeedAekAldalnG.kel..ggrelrv<-*
                   ++   e+A kA +al+++k+l++++r++ v   
     bm01750   126 TYCERESALKAQSALHEqKTLpgMNRPIQV    155  

PF00076.12.fs: domain 2 of 3, from 179 to 250: score 65.8, E = 1.1e-17
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfVg L++  +e+d+++lF+ fG ie++ i r      g+skG+aFV
     bm01750   179    LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRG---PDGNSKGCAFV 222  

                   eFedeedAekAldalnG.kelggrelrv<-*
                   ++ ++ +A++A+ al+G+++  g        
     bm01750   223 KYSSHAEAQAAINALHGsQTMPGASSSL    250  

PF00076.12.ls: domain 2 of 3, from 179 to 250: score 67.8, E = 3.3e-17
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfVg L++  +e+d+++lF+ fG ie++ i r      g+skG+aFV
     bm01750   179    LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRG---PDGNSKGCAFV 222  

                   eFedeedAekAldalnG.kelggrelrv<-*
                   ++ ++ +A++A+ al+G+++  g        
     bm01750   223 KYSSHAEAQAAINALHGsQTMPGASSSL    250  

PF00076.12.ls: domain 3 of 3, from 447 to 498: score 19.0, E = 0.0023
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lf+  Lp++  +++L ++F                       +f+FV
     bm01750   447    LFIYHLPQEFGDAELMQMF-------------L---------PFGFV 471  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F+++ +A+ A++a+nG+++g ++l+v   
     bm01750   472 SFDNPASAQTAIQAMNGFQIGMKRLKV    498  

PF00076.12.fs: domain 3 of 3, from 467 to 498: score 32.1, E = 3e-08
                   *->GfaFVeFedeedAekAldalnGkelggrelrv<-*
                      +f+FV F+++ +A+ A++a+nG+++g ++l+v   
     bm01750   467    PFGFVSFDNPASAQTAIQAMNGFQIGMKRLKV    498  

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