# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm01784.fasta.nr -Q bm01784.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm01784, 226 aa vs /cdna2/lib/nr/nr library 2779448989 residues in 8089198 sequences statistics sampled from 60000 to 8067596 sequences Expectation_n fit: rho(ln(x))= 6.9247+/-0.000215; mu= 2.1779+/- 0.012 mean_var=177.9228+/-34.119, 0's: 31 Z-trim: 52 B-trim: 37 in 1/65 Lambda= 0.096152 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8089198) gi|52783434|sp|P84157.1|MXRA7_HUMAN RecName: Full= ( 204) 1373 201.4 9e-50 gi|114670651|ref|XP_001153166.1| PREDICTED: simila ( 204) 1339 196.7 2.4e-48 gi|56549133|ref|NP_001008529.1| transmembrane anch ( 177) 1141 169.1 4e-40 gi|112180479|gb|AAH53983.1| Matrix-remodelling ass ( 170) 1138 168.7 5.2e-40 gi|114670653|ref|XP_001153221.1| PREDICTED: simila ( 170) 1134 168.1 7.6e-40 gi|169163403|ref|XP_001720196.1| PREDICTED: hypoth ( 170) 1133 168.0 8.3e-40 gi|194676328|ref|XP_001253302.2| PREDICTED: simila ( 376) 722 111.4 2.1e-22 gi|194216610|ref|XP_001916768.1| PREDICTED: simila ( 145) 684 105.6 4.2e-21 gi|119609832|gb|EAW89426.1| matrix-remodelling ass ( 432) 610 95.9 1.1e-17 gi|12849452|dbj|BAB28347.1| unnamed protein produc ( 178) 597 93.7 2.1e-17 gi|124056484|sp|Q9CZH7.2|MXRA7_MOUSE RecName: Full ( 178) 596 93.5 2.3e-17 gi|148702648|gb|EDL34595.1| RIKEN cDNA 1810057P16, ( 194) 596 93.6 2.4e-17 gi|109489418|ref|XP_001074923.1| PREDICTED: simila ( 176) 524 83.5 2.3e-14 gi|149054877|gb|EDM06694.1| rCG35588 [Rattus norve ( 159) 516 82.4 4.6e-14 gi|109492287|ref|XP_001081730.1| PREDICTED: simila ( 150) 508 81.2 9.6e-14 gi|126308963|ref|XP_001380613.1| PREDICTED: simila ( 171) 492 79.1 4.9e-13 gi|149637689|ref|XP_001507759.1| PREDICTED: simila ( 107) 480 77.2 1.1e-12 gi|60551294|gb|AAH91054.1| LOC594877 protein [Xeno ( 234) 453 73.8 2.6e-11 gi|118099623|ref|XP_001233207.1| PREDICTED: simila ( 219) 428 70.3 2.7e-10 gi|34535843|dbj|BAC87451.1| unnamed protein produc ( 213) 375 63.0 4.4e-08 gi|12862293|dbj|BAB32401.1| unnamed protein produc ( 151) 372 62.4 4.6e-08 gi|51950301|gb|AAH82467.1| MGC84377 protein [Xenop ( 213) 371 62.4 6.4e-08 gi|148702647|gb|EDL34594.1| RIKEN cDNA 1810057P16, ( 156) 334 57.1 1.8e-06 gi|73964985|ref|XP_864086.1| PREDICTED: hypothetic ( 108) 292 51.1 8.1e-05 gi|56316152|emb|CAI29408.1| novel protein [Danio r ( 69) 281 49.4 0.00017 gi|2290392|gb|AAB65141.1| IgG and IgE immunoreacti ( 128) 267 47.7 0.001 gi|2290394|gb|AAB65142.1| IgG and IgE immunoreacti ( 144) 263 47.2 0.0016 gi|210094436|gb|EEA42618.1| hypothetical protein B ( 301) 250 45.8 0.0091 >>gi|52783434|sp|P84157.1|MXRA7_HUMAN RecName: Full=Matr (204 aa) initn: 1373 init1: 1373 opt: 1373 Z-score: 1050.1 bits: 201.4 E(): 9e-50 Smith-Waterman score: 1373; 100.000% identity (100.000% similar) in 204 aa overlap (23-226:1-204) 10 20 30 40 50 60 bm0178 AATGRGGLPRGPSWPALGGRGAMEAPAELLAALPALATALALLLAWLLVRRGAAASPEPA :::::::::::::::::::::::::::::::::::::: gi|527 MEAPAELLAALPALATALALLLAWLLVRRGAAASPEPA 10 20 30 70 80 90 100 110 120 bm0178 RAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|527 RAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDP 40 50 60 70 80 90 130 140 150 160 170 180 bm0178 AAAPAEAEEQAVEARQEEEQDLDGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|527 AAAPAEAEEQAVEARQEEEQDLDGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMT 100 110 120 130 140 150 190 200 210 220 bm0178 KEELEEEQRVQKEQLAAIFKLMKDNKETFGEMSDGDVQEQLRLYDM :::::::::::::::::::::::::::::::::::::::::::::: gi|527 KEELEEEQRVQKEQLAAIFKLMKDNKETFGEMSDGDVQEQLRLYDM 160 170 180 190 200 >>gi|114670651|ref|XP_001153166.1| PREDICTED: similar to (204 aa) initn: 1339 init1: 1339 opt: 1339 Z-score: 1024.6 bits: 196.7 E(): 2.4e-48 Smith-Waterman score: 1339; 98.039% identity (98.529% similar) in 204 aa overlap (23-226:1-204) 10 20 30 40 50 60 bm0178 AATGRGGLPRGPSWPALGGRGAMEAPAELLAALPALATALALLLAWLLVRRGAAASPEPA :::::::::::::::::::::::::::::::::::::: gi|114 MEAPAELLAALPALATALALLLAWLLVRRGAAASPEPA 10 20 30 70 80 90 100 110 120 bm0178 RAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDP 40 50 60 70 80 90 130 140 150 160 170 180 bm0178 AAAPAEAEEQAVEARQEEEQDLDGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMT ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|114 AAAPAEAEEQAVEARQEEEQDLDGEKGPSSEGPEDEDGEGFSFKYSPGKLRGNQYKKMMT 100 110 120 130 140 150 190 200 210 220 bm0178 KEELEEEQRVQKEQLAAIFKLMKDNKETFGEMSDGDVQEQLRLYDM :::::::::: : :::::::::: :::::::::::::::::::::: gi|114 KEELEEEQRVLKGQLAAIFKLMKVNKETFGEMSDGDVQEQLRLYDM 160 170 180 190 200 >>gi|56549133|ref|NP_001008529.1| transmembrane anchor p (177 aa) initn: 1343 init1: 1141 opt: 1141 Z-score: 876.9 bits: 169.1 E(): 4e-40 Smith-Waterman score: 1141; 98.817% identity (100.000% similar) in 169 aa overlap (23-191:1-169) 10 20 30 40 50 60 bm0178 AATGRGGLPRGPSWPALGGRGAMEAPAELLAALPALATALALLLAWLLVRRGAAASPEPA :::::::::::::::::::::::::::::::::::::: gi|565 MEAPAELLAALPALATALALLLAWLLVRRGAAASPEPA 10 20 30 70 80 90 100 110 120 bm0178 RAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|565 RAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDP 40 50 60 70 80 90 130 140 150 160 170 180 bm0178 AAAPAEAEEQAVEARQEEEQDLDGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|565 AAAPAEAEEQAVEARQEEEQDLDGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMT 100 110 120 130 140 150 190 200 210 220 bm0178 KEELEEEQRVQKEQLAAIFKLMKDNKETFGEMSDGDVQEQLRLYDM :::::::::.. gi|565 KEELEEEQRIELTSDLTSL 160 170 >>gi|112180479|gb|AAH53983.1| Matrix-remodelling associa (170 aa) initn: 1340 init1: 1138 opt: 1138 Z-score: 874.9 bits: 168.7 E(): 5.2e-40 Smith-Waterman score: 1138; 98.235% identity (100.000% similar) in 170 aa overlap (23-192:1-170) 10 20 30 40 50 60 bm0178 AATGRGGLPRGPSWPALGGRGAMEAPAELLAALPALATALALLLAWLLVRRGAAASPEPA :::::::::::::::::::::::::::::::::::::: gi|112 MEAPAELLAALPALATALALLLAWLLVRRGAAASPEPA 10 20 30 70 80 90 100 110 120 bm0178 RAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|112 RAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDP 40 50 60 70 80 90 130 140 150 160 170 180 bm0178 AAAPAEAEEQAVEARQEEEQDLDGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|112 AAAPAEAEEQAVEARQEEEQDLDGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMT 100 110 120 130 140 150 190 200 210 220 bm0178 KEELEEEQRVQKEQLAAIFKLMKDNKETFGEMSDGDVQEQLRLYDM :::::::::... gi|112 KEELEEEQRTEE 160 170 >>gi|114670653|ref|XP_001153221.1| PREDICTED: similar to (170 aa) initn: 1336 init1: 1134 opt: 1134 Z-score: 871.9 bits: 168.1 E(): 7.6e-40 Smith-Waterman score: 1134; 97.647% identity (100.000% similar) in 170 aa overlap (23-192:1-170) 10 20 30 40 50 60 bm0178 AATGRGGLPRGPSWPALGGRGAMEAPAELLAALPALATALALLLAWLLVRRGAAASPEPA :::::::::::::::::::::::::::::::::::::: gi|114 MEAPAELLAALPALATALALLLAWLLVRRGAAASPEPA 10 20 30 70 80 90 100 110 120 bm0178 RAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDP 40 50 60 70 80 90 130 140 150 160 170 180 bm0178 AAAPAEAEEQAVEARQEEEQDLDGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMT ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|114 AAAPAEAEEQAVEARQEEEQDLDGEKGPSSEGPEDEDGEGFSFKYSPGKLRGNQYKKMMT 100 110 120 130 140 150 190 200 210 220 bm0178 KEELEEEQRVQKEQLAAIFKLMKDNKETFGEMSDGDVQEQLRLYDM :::::::::... gi|114 KEELEEEQRTEE 160 170 >>gi|169163403|ref|XP_001720196.1| PREDICTED: hypothetic (170 aa) initn: 1335 init1: 1133 opt: 1133 Z-score: 871.1 bits: 168.0 E(): 8.3e-40 Smith-Waterman score: 1133; 97.647% identity (100.000% similar) in 170 aa overlap (23-192:1-170) 10 20 30 40 50 60 bm0178 AATGRGGLPRGPSWPALGGRGAMEAPAELLAALPALATALALLLAWLLVRRGAAASPEPA :::::::::::::::::::::::::::::::::::::: gi|169 MEAPAELLAALPALATALALLLAWLLVRRGAAASPEPA 10 20 30 70 80 90 100 110 120 bm0178 RAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 RAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDP 40 50 60 70 80 90 130 140 150 160 170 180 bm0178 AAAPAEAEEQAVEARQEEEQDLDGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: gi|169 AAAPAEAEEQAVEARQEEEQDLDGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYEKMMT 100 110 120 130 140 150 190 200 210 220 bm0178 KEELEEEQRVQKEQLAAIFKLMKDNKETFGEMSDGDVQEQLRLYDM :::::::::... gi|169 KEELEEEQRTEE 160 170 >>gi|194676328|ref|XP_001253302.2| PREDICTED: similar to (376 aa) initn: 745 init1: 487 opt: 722 Z-score: 558.9 bits: 111.4 E(): 2.1e-22 Smith-Waterman score: 1031; 74.249% identity (79.399% similar) in 233 aa overlap (1-226:165-376) 10 20 bm0178 AATGRG-----GLPRGPSWPALGGRGAMEA :. ::: :.: : :::::::: gi|194 GSCPQHLESPGARGGRRRAGGVARRGLRPGAGRGRGEAGSLGVPAGGH---SGGRGAMEA 140 150 160 170 180 190 30 40 50 60 70 80 bm0178 PAELLAALPALATALALLLAWLLVRRGAAASPEPAR-APPEPAPPAEATGAPAPSRPCAP ::::::::::::::::::::::::::::::::.: . :::::::::::. ::: ::: gi|194 PAELLAALPALATALALLLAWLLVRRGAAASPDPPEPAPPEPAPPAEASVKPAPPGPCAA 200 210 220 230 240 250 90 100 110 120 130 140 bm0178 EPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDLDG ::::.: :: :: : : ::: ::::::::::.: ::: ::.::: gi|194 EPAAAPEGPLEP------------APPDEPE------AAPAEAEEQAAEERQEAEQELDG 260 270 280 290 150 160 170 180 190 200 bm0178 EKGPSSEGPEEEDG-EGFSFKYSPGKLRGNQYKKMMTKEELEEEQRVQKEQLAAIFKLMK :.: . ::::::: :.::::::::::::::::::::::::::::::.:::::::::::: gi|194 EEGSPQAGPEEEDGGEAFSFKYSPGKLRGNQYKKMMTKEELEEEQRVKKEQLAAIFKLMK 300 310 320 330 340 350 210 220 bm0178 DNKETFGEMSDGDVQEQLRLYDM ::::::::::::::::::::::: gi|194 DNKETFGEMSDGDVQEQLRLYDM 360 370 >>gi|194216610|ref|XP_001916768.1| PREDICTED: similar to (145 aa) initn: 624 init1: 624 opt: 684 Z-score: 535.3 bits: 105.6 E(): 4.2e-21 Smith-Waterman score: 684; 80.916% identity (90.076% similar) in 131 aa overlap (96-226:17-145) 70 80 90 100 110 120 bm0178 PAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAAPA :: ::.: . : : ::.: :.::. :: gi|194 MTCKKYCETGVNPRAAPG-PAALELSAAPERPCEPNGQGEPAG-PA 10 20 30 40 130 140 150 160 170 180 bm0178 EAEEQAVEARQEEEQDLDGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMTKEELE ::::::.::::::::. :::.:: . ::::::::.::::::::::::::::::::::::: gi|194 EAEEQAAEARQEEEQEQDGEEGPPQAGPEEEDGEAFSFKYSPGKLRGNQYKKMMTKEELE 50 60 70 80 90 100 190 200 210 220 bm0178 EEQRVQKEQLAAIFKLMKDNKETFGEMSDGDVQEQLRLYDM ::::::::::::::.::::::::::::::::.::::::::: gi|194 EEQRVQKEQLAAIFQLMKDNKETFGEMSDGDMQEQLRLYDM 110 120 130 140 >>gi|119609832|gb|EAW89426.1| matrix-remodelling associa (432 aa) initn: 841 init1: 603 opt: 610 Z-score: 474.2 bits: 95.9 E(): 1.1e-17 Smith-Waterman score: 634; 52.140% identity (62.646% similar) in 257 aa overlap (4-226:190-432) 10 20 30 bm0178 AATGRGGLPRGPSWPALGGRGAMEAPAELLA-- :: :: : :. : .. . : gi|119 CDGSVGLCDGSVGLCDGSVGLCDGRVGLCDGRVGLCDGSVGLCDGSVGLCDGSVGLCDGR 160 170 180 190 200 210 40 50 60 70 80 bm0178 ALPALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRP--CAPEPAAS ::: ::....: ..: : : ::..::. : . : :.. :: : gi|119 ALP--ATSMTFL-----AQR--AHPPAPAHSPPRAIP-----NFPQPQEMILVAPTMAQL 220 230 240 250 260 90 100 110 120 bm0178 PAGPEEPGE------P-AGL-------GELGEPAGPGEPEGPGDPAAA--------PAEA : : :. . : :: .:: :: . .: . :. : : . gi|119 PDGGEDSDHETLERLPLAGRTFTDSFNAELKARAGAATGRGQAGPSRASSVSPTFCPPTT 270 280 290 300 310 320 130 140 150 160 170 bm0178 EEQAVEAR--------QEEEQDLDGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMM .. : :. :::::::::::::::::::::::::::::::::::::::::::: gi|119 SHHPVCAKGTDPVLVLQEEEQDLDGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMM 330 340 350 360 370 380 180 190 200 210 220 bm0178 TKEELEEEQRVQKEQLAAIFKLMKDNKETFGEMSDGDVQEQLRLYDM ::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TKEELEEEQRVQKEQLAAIFKLMKDNKETFGEMSDGDVQEQLRLYDM 390 400 410 420 430 >>gi|12849452|dbj|BAB28347.1| unnamed protein product [M (178 aa) initn: 497 init1: 497 opt: 597 Z-score: 469.0 bits: 93.7 E(): 2.1e-17 Smith-Waterman score: 765; 63.768% identity (74.396% similar) in 207 aa overlap (23-226:1-178) 10 20 30 40 50 60 bm0178 AATGRGGLPRGPSWPALGGRGAMEAPAELLAALPALATALALLLAWLLVRRGAAASPEPA ::.:.:::::::::.:::::::::::.::::: : : gi|128 MESPVELLAALPALVTALALLLAWLLLRRGAARVPAPE 10 20 30 70 80 90 100 110 bm0178 RAPPEPAPPAEATGAPAPSRP---CAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGP . . :: ::::: .: :::::: : ::.. : gi|128 STASDEAP-----GAPAPPEPPESCAPEPA--------------------PEGPSQSERV 40 50 60 70 120 130 140 150 160 170 bm0178 GDPAAAPAEAEEQAVEARQEEEQDLDGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKK .: : .:::: :.:.::.: : :.: :: .: :::::: .::::::::.:::.:::: gi|128 AD--AEESEAEEPAAEGRQDE--DSDSEMGPPTEEPEEEDGAAFSFKYSPGQLRGSQYKK 80 90 100 110 120 180 190 200 210 220 bm0178 MMTKEELEEEQRVQKEQLAAIFKLMKDNKETFGEMSDGDVQEQLRLYDM ::::::::::.::::::::::::::::::.:::::::::.::::::::: gi|128 MMTKEELEEEHRVQKEQLAAIFKLMKDNKDTFGEMSDGDMQEQLRLYDM 130 140 150 160 170 226 residues in 1 query sequences 2779448989 residues in 8089198 library sequences Tcomplib [34.26] (8 proc) start: Thu Apr 16 10:54:29 2009 done: Thu Apr 16 10:57:46 2009 Total Scan time: 802.660 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]