hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-10175276/chunk_1/iprscan-20080807-10175276.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm01791 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00149.18.ls Calcineurin-like phosphoesterase 70.8 4e-18 1 PF00149.18.fs Calcineurin-like phosphoesterase 68.8 8.8e-18 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00149.18.fs 1/1 234 496 .. 1 124 [] 68.8 8.8e-18 PF00149.18.ls 1/1 234 496 .. 1 124 [] 70.8 4e-18 Alignments of top-scoring domains: PF00149.18.fs: domain 1 of 1, from 234 to 496: score 68.8, E = 8.8e-18 *->mrilvigDlHggfedl............................... ril+++DlH +++l++++++ ++ +++++ ++ ++++ + + bm01791 234 SRILFLTDLHWDHDYLegtdpdcadplccrrgsglppasrpgagywg 280 .............llllela.e.kpdlvlflGDlvdrgppslevllll.. + ++ + + ++ + ll l++++++d+v+++GD+ ++ + + +l+ bm01791 281 eyskcdlplrtleSLLSGLGpAgPFDMVYWTGDIPAHDVWHQTRQDQLra 330 ......falklkapgpvylvrGNHDfdsgnsvl................. ++ + +++k++ p+pvy + GNH++ ++ns+ +++ +++++++ + bm01791 331 lttvtaLVRKFLGPVPVYPAVGNHESTPVNSFPppfiegnhssrwlyeam 380 .................................................. + + ++ + + + ++++ +++++ + + + ++ ++ +++ + bm01791 381 akawepwlpaealrtlriggfyalspypglrlislnmnfcsrenfwllin 430 .....w.eflell.lllla.lvdgkillvHgplspd.........leell + ++ ++++ + +l +++ +d++ +++H p+ + ++++++ + + bm01791 431 stdpaGqLQWLVGeLQAAEdRGDKVHIIGHIPPGHClkswswnyyRIVAR 480 k.ngvdlvirGHtHvp<-* ++n + + ++GHtHv+ bm01791 481 YeNTLAAQFFGHTHVD 496 PF00149.18.ls: domain 1 of 1, from 234 to 496: score 70.8, E = 4e-18 *->mrilvigDlHggfedl............................... ril+++DlH +++l++++++ ++ +++++ ++ ++++ + + bm01791 234 SRILFLTDLHWDHDYLegtdpdcadplccrrgsglppasrpgagywg 280 .............llllela.e.kpdlvlflGDlvdrgppslevllll.. + ++ + + ++ + ll l++++++d+v+++GD+ ++ + + +l+ bm01791 281 eyskcdlplrtleSLLSGLGpAgPFDMVYWTGDIPAHDVWHQTRQDQLra 330 ......falklkapgpvylvrGNHDfdsgnsvl................. ++ + +++k++ p+pvy + GNH++ ++ns+ +++ +++++++ + bm01791 331 lttvtaLVRKFLGPVPVYPAVGNHESTPVNSFPppfiegnhssrwlyeam 380 .................................................. + + ++ + + + ++++ +++++ + + + ++ ++ +++ + bm01791 381 akawepwlpaealrtlriggfyalspypglrlislnmnfcsrenfwllin 430 .....w.eflell.lllla.lvdgkillvHgplspd.........leell + ++ ++++ + +l +++ +d++ +++H p+ + ++++++ + + bm01791 431 stdpaGqLQWLVGeLQAAEdRGDKVHIIGHIPPGHClkswswnyyRIVAR 480 k.ngvdlvirGHtHvp<-* ++n + + ++GHtHv+ bm01791 481 YeNTLAAQFFGHTHVD 496 //