hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-10231714/chunk_1/iprscan-20080807-10231714.nocrc
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Query sequence: bm01840
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00241.10.fs Cofilin/tropomyosin-type actin-binding pr    50.1    8.9e-14   2
PF00241.10.ls Cofilin/tropomyosin-type actin-binding pr    38.9    1.7e-08   2

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00241.10.ls   1/2      51   179 ..     1   146 []    24.4  7.1e-05
PF00241.10.fs   1/2      98   170 ..    54   137 ..    37.5  3.3e-10
PF00241.10.ls   2/2     224   353 ..     1   146 []    14.4  0.00041

Alignments of top-scoring domains:
PF00241.10.ls: domain 1 of 2, from 51 to 179: score 24.4, E = 7.1e-05
                   *->delktsfnelkkrkkkkhryiifkIdknkteIvv....eevGkkast
                      +elk+ f + +++ +  +r i   I++  ++ v++ ++e+vG     
     bm01840    51    EELKEFFAKARAG-S--VRLIKVVIED--EQLVLgasqEPVG---RW 89   

                   gasydeFveelpqlderecrYavydveyttdrqaeeeskksKivFvsWcg
                   ++ yd  +  lp ld++++ Y +y+ +++       +++    +F +W+ 
     bm01840    90 DQDYD--RAVLPLLDAQQPCYLLYRLDSQ-------NAQGFEWLFLAWS- 129  

                   PDtPApvKsKMlYASskdalkkalgGdqiqvevqatIgDasdlseealke
                   PD+ +pv+ KMlYA++ +++kk++gG+ i+ e+ +t  + +dls      
     bm01840   130 PDN-SPVRLKMLYAATRATVKKEFGGGHIKDELFGT--VKDDLSFAGYQK 176  

                   klk<-*
                    l+   
     bm01840   177 HLS    179  

PF00241.10.fs: domain 1 of 2, from 98 to 170: score 37.5, E = 3.3e-10
                   *->lpqlderecrYavydveyttdrqaeeeskksKivFvsWcgPDtPApv
                      lp ld++++ Y +y+ +++       +++    +F +W+ PD+ +pv
     bm01840    98    LPLLDAQQPCYLLYRLDSQ-------NAQGFEWLFLAWS-PDN-SPV 135  

                   KsKMlYASskdalkkalgGdqiqvevqatIgDasdls<-*
                   + KMlYA++ +++kk++gG+ i+ e+ +t  + +dls   
     bm01840   136 RLKMLYAATRATVKKEFGGGHIKDELFGT--VKDDLS    170  

PF00241.10.ls: domain 2 of 2, from 224 to 353: score 14.4, E = 0.00041
                   *->delktsfnelkkrkkkkhryiifkIdknkteIvveevGkkastgasy
                      +e + +++ lk +    ++yi +k+d + ++I+++++    ++ + +
     bm01840   224    PEAQRALQQLKQK---MVNYIQMKLDLERETIELVHT----EPTD-V 262  

                   deFveelpqlderecrYavydveyttdrqaeeeskksKivFvsWcgPDtP
                   +++   +p       rY ++ ++ t+      e++    v ++++ + + 
     bm01840   263 AQLPSRVP---RDAARYHFFLYKHTH------EGDPLESVVFIYS-MPGY 302  

                   .ApvKsKMlYASskdalkkalgGdq.iqvevqatIgDasdlseealkekl
                   ++ +K +MlY+S k +l  +++ d ++ + + ++IgD  +l+ e l++ +
     bm01840   303 kCSIKERMLYSSCKSRLLDSVEQDFhLEIAKKIEIGDGAELTAEFLYDEV 352  

                   k<-*
                       
     bm01840   353 H    353  

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